RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 SNX11Q9Y5W9 270 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 BRWD1Q9NSI6 2320 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 AOX1Q06278 1338 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 F8W031 263 aaPredicted RBP6.3□□□□□ -1.4
VPS53-219ENST00000576019 STX16-NPEPL1H3BU86 382 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 H7C4K7 107 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 MYO1CO00159 1063 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 STX16O14662 325 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 KIAA0355O15063 1070 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 PPP6R2O75170 966 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 ITGA10O75578 1167 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 GLP2RO95838 553 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 GNAI2P04899 355 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 ADRB1P08588 477 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 MST1P26927 711 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 PTPN7P35236 360 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 GGT5P36269 586 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 ALDH1A3P47895 512 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 CLK1P49759 484 aaKnown RBP6.3□□□□□ -1.4
VPS53-219ENST00000576019 SNX16P57768 344 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 PSMC1P62191 440 aaKnown RBP6.3□□□□□ -1.4
VPS53-219ENST00000576019 POU6F2P78424 691 aaPredicted RBP6.3□□□□□ -1.4
VPS53-219ENST00000576019 IFI35P80217 286 aaPredicted RBP6.3□□□□□ -1.4
VPS53-219ENST00000576019 NSUN2Q08J23 767 aaKnown RBP eCLIP6.3□□□□□ -1.4
VPS53-219ENST00000576019 DMWDQ09019 674 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 KCNAB1Q14722 419 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 ANKRD1Q15327 319 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 STILQ15468 1287 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 TRIM71Q2Q1W2 868 aaKnown RBP6.3□□□□□ -1.4
VPS53-219ENST00000576019 C19orf54Q5BKX5 351 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 UBXN11Q5T124 520 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 FAXCQ5TGI0 409 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 GRAMD4Q6IC98 578 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 RPUSD3Q6P087 351 aaKnown RBP6.3□□□□□ -1.4
VPS53-219ENST00000576019 DPP8Q6V1X1 898 aaPredicted RBP6.3□□□□□ -1.4
VPS53-219ENST00000576019 H1FNTQ75WM6 255 aaPredicted RBP6.3□□□□□ -1.4
VPS53-219ENST00000576019 GALNTL5Q7Z4T8 443 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 ANKS1BQ7Z6G8 1248 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 IRF2BP1Q8IU81 584 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 UNC5BQ8IZJ1 945 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 LILRA3Q8N6C8 439 aaPredicted RBP6.3□□□□□ -1.4
VPS53-219ENST00000576019 NKD2Q969F2 451 aaPredicted RBP6.3□□□□□ -1.4
VPS53-219ENST00000576019 CDHR1Q96JP9 859 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 ADPGKQ9BRR6 497 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 OSBPL1AQ9BXW6 950 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 ITPAQ9BY32 194 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 KIAA1683Q9H0B3 1180 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 BRD8Q9H0E9 1235 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 NELFAQ9H3P2 528 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 CD248Q9HCU0 757 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 MYOZ2Q9NPC6 264 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 G6PC2Q9NQR9 355 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 SAE1Q9UBE0 346 aaPredicted RBP6.3□□□□□ -1.4
VPS53-219ENST00000576019 STOML1Q9UBI4 398 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 KCND3Q9UK17 655 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 DERAQ9Y315 318 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 ABCC12Q96J65 1359 aa6.3□□□□□ -1.4
VPS53-219ENST00000576019 OTOFQ9HC10 1997 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 EVC2Q86UK5 1308 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 GTPBP1O00178 669 aaKnown RBP6.29□□□□□ -1.4
VPS53-219ENST00000576019 MAFO75444 373 aaPredicted RBP6.29□□□□□ -1.4
VPS53-219ENST00000576019 SRGAP2BP0DMP2 458 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 HK2P52789 917 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 NLRP5P59047 1200 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 MC1RQ01726 317 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 CREB5Q02930 508 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 CALD1Q05682 793 aaKnown RBP6.29□□□□□ -1.4
VPS53-219ENST00000576019 IKZF1Q13422 519 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 RRS1Q15050 365 aaKnown RBP6.29□□□□□ -1.4
VPS53-219ENST00000576019 RPS6KA2Q15349 733 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 PLAG1Q6DJT9 500 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 TAS1R1Q7RTX1 841 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 KDELC2Q7Z4H8 507 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 DNAJB7Q7Z6W7 309 aaPredicted RBP6.29□□□□□ -1.4
VPS53-219ENST00000576019 PXKQ7Z7A4 578 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 TXNRD3Q86VQ6 643 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 PLXDC1Q8IUK5 500 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 TMEFF1Q8IYR6 380 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 BCL6BQ8N143 479 aaPredicted RBP6.29□□□□□ -1.4
VPS53-219ENST00000576019 GALNT4Q8N4A0 578 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 ARL10Q8N8L6 244 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 STAMQ92783 540 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 ATP2A3Q93084 1043 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 HRASLS5Q96KN8 279 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 CNDP2Q96KP4 475 aaKnown RBP6.29□□□□□ -1.4
VPS53-219ENST00000576019 PACSIN1Q9BY11 444 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 USP44Q9H0E7 712 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 SEPT11Q9NVA2 429 aaKnown RBP6.29□□□□□ -1.4
VPS53-219ENST00000576019 RAXQ9Y2V3 346 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 SNX8Q9Y5X2 465 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 HCFC2Q9Y5Z7 792 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 PIAS3Q9Y6X2 628 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 SCN9AQ15858 1988 aa6.29□□□□□ -1.4
VPS53-219ENST00000576019 FRYLO94915 3013 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 CCDC78A2IDD5 438 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 VWA3AA6NCI4 1184 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 TRIM64A6NGJ6 449 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 TRIM64BA6NI03 449 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 ZNF785A8K8V0 405 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 KLK10O43240 276 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms