RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 IRGQQ8WZA9 623 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 TFAP2BQ92481 460 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 NELL1Q92832 810 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 HPS1Q92902 700 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 PLD4Q96BZ4 506 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 HSFY1Q96LI6 401 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 KREMEN1Q96MU8 473 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 TUBGCP2Q9BSJ2 902 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 TRIM62Q9BVG3 475 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 NDST4Q9H3R1 872 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 FBRSL1Q9HCM7 1045 aaKnown RBP8.48□□□□□ -1.05
VPS53-214ENST00000572607 SPHK2Q9NRA0 654 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 ST7Q9NRC1 585 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 ABCC13Q9NSE7 274 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 ANO10Q9NW15 660 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 MARCH2Q9P0N8 246 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 WDR35Q9P2L0 1181 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 DEC1Q9P2X7 70 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 NCDNQ9UBB6 729 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 GMEB2Q9UKD1 530 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 NFE2L3Q9Y4A8 694 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 OBSL1O75147 1896 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 FRYQ5TBA9 3013 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 TBC1D3BA6NDS4 549 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 K7ESF4 209 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 RNF225M0QZC1 329 aaPredicted RBP8.47□□□□□ -1.05
VPS53-214ENST00000572607 TULP2O00295 520 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 STC2O76061 302 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 CYBBP04839 570 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 TDGF1P13385 188 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 SNRPBP14678 240 aaKnown RBP8.47□□□□□ -1.05
VPS53-214ENST00000572607 CORO1AP31146 461 aaKnown RBP8.47□□□□□ -1.05
VPS53-214ENST00000572607 HOXA6P31267 233 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 ACADSBP45954 432 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 FNTBP49356 437 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 HARS2P49590 506 aaKnown RBP8.47□□□□□ -1.05
VPS53-214ENST00000572607 SNX16P57768 344 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 DAOAP59103 153 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 MRPS21P82921 87 aaKnown RBP8.47□□□□□ -1.05
VPS53-214ENST00000572607 SIM2Q14190 667 aaPredicted RBP8.47□□□□□ -1.05
VPS53-214ENST00000572607 MEA1Q16626 185 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 RSPO4Q2I0M5 234 aaPredicted RBP8.47□□□□□ -1.05
VPS53-214ENST00000572607 C2orf27AQ580R0 203 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 HSP90AA4PQ58FG1 418 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 FKBP15Q5T1M5 1219 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 CCDC183Q5T5S1 534 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 BSPRYQ5W0U4 402 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 NAIF1Q69YI7 327 aaPredicted RBP8.47□□□□□ -1.05
VPS53-214ENST00000572607 GRAMD4Q6IC98 578 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 PMF1Q6P1K2 205 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 PRR23BQ6ZRT6 265 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 TPGS1Q6ZTW0 290 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 CEP68Q76N32 757 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 SYT13Q7L8C5 426 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 TRMT11Q7Z4G4 463 aaKnown RBP8.47□□□□□ -1.05
VPS53-214ENST00000572607 IRF2BP1Q8IU81 584 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 SCML4Q8N228 414 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 NAT16Q8N8M0 369 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 TSTD1Q8NFU3 115 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 ENOX1Q8TC92 643 aaKnown RBP8.47□□□□□ -1.05
VPS53-214ENST00000572607 SLC35F5Q8WV83 523 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 RUBCNQ92622 972 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 NOX5Q96PH1 765 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 MED15Q96RN5 788 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 BBS2Q9BXC9 721 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 MIS12Q9H081 205 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 EPC1Q9H2F5 836 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 PDCL3Q9H2J4 239 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 DNAJC17Q9NVM6 304 aaKnown RBP8.47□□□□□ -1.05
VPS53-214ENST00000572607 MARK1Q9P0L2 795 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 DNAJC12Q9UKB3 198 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 SMG5Q9UPR3 1016 aaKnown RBP8.47□□□□□ -1.05
VPS53-214ENST00000572607 CNTN6Q9UQ52 1028 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 HBS1LQ9Y450 684 aaKnown RBP8.47□□□□□ -1.05
VPS53-214ENST00000572607 CEP83Q9Y592 693 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 F5P12259 2224 aa8.47□□□□□ -1.05
VPS53-214ENST00000572607 KIF26AQ9ULI4 1882 aaPredicted RBP8.47□□□□□ -1.05
VPS53-214ENST00000572607 CCDC163A0A0D9SF12 145 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 YJEFN3A6XGL0 299 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 E7ENQ6 273 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 PIK3R2O00459 728 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 CAPN9O14815 690 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 LILRB5O75023 590 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 TULP3O75386 442 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 ALDH1A2O94788 518 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 APBB3O95704 486 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 TYRP14679 529 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 JUNDP17535 347 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 PON1P27169 355 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 TNFRSF4P43489 277 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 SLC6A11P48066 632 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 ATXN1P54253 815 aaKnown RBP8.46□□□□□ -1.06
VPS53-214ENST00000572607 BPIFB4P59827 614 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 ZNF445P59923 1031 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 PTK2Q05397 1052 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 DMC1Q14565 340 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 HSF5Q4G112 596 aaPredicted RBP8.46□□□□□ -1.06
VPS53-214ENST00000572607 TCP11X2Q5H9J9 407 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 EOGTQ5NDL2 527 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 C10orf76Q5T2E6 689 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms