RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 KDF1Q8NAX2 398 aaPredicted RBP15.65■□□□□ 0.1
CLN3-236ENST00000568558 GATA6Q92908 595 aa15.65■□□□□ 0.1
CLN3-236ENST00000568558 EEF2KMTQ96G04 330 aa15.65■□□□□ 0.1
CLN3-236ENST00000568558 SCAND2PQ9GZW5 306 aaPredicted RBP15.65■□□□□ 0.1
CLN3-236ENST00000568558 THAP10Q9P2Z0 257 aaPredicted RBP15.65■□□□□ 0.1
CLN3-236ENST00000568558 AGO1Q9UL18 857 aaKnown RBP15.65■□□□□ 0.1
CLN3-236ENST00000568558 TP53BP1Q12888 1972 aaPredicted RBP15.64■□□□□ 0.09
CLN3-236ENST00000568558 SPAARA0A1B0GVQ0 90 aa15.64■□□□□ 0.09
CLN3-236ENST00000568558 NPC1O15118 1278 aa15.64■□□□□ 0.09
CLN3-236ENST00000568558 STX10O60499 249 aa15.64■□□□□ 0.09
CLN3-236ENST00000568558 EPB41P11171 864 aaKnown RBP15.64■□□□□ 0.09
CLN3-236ENST00000568558 ZNF132P52740 706 aa15.64■□□□□ 0.09
CLN3-236ENST00000568558 YWHAGP61981 247 aaKnown RBP eCLIP15.64■□□□□ 0.09
CLN3-236ENST00000568558 RSRC2Q7L4I2 434 aaKnown RBP15.64■□□□□ 0.09
CLN3-236ENST00000568558 ANKS1BQ7Z6G8 1248 aa15.64■□□□□ 0.09
CLN3-236ENST00000568558 DENND1CQ8IV53 801 aa15.64■□□□□ 0.09
CLN3-236ENST00000568558 ANKRD52Q8NB46 1076 aa15.64■□□□□ 0.09
CLN3-236ENST00000568558 OR2I1PQ8NGU4 316 aa15.64■□□□□ 0.09
CLN3-236ENST00000568558 UCMAQ8WVF2 138 aa15.64■□□□□ 0.09
CLN3-236ENST00000568558 FOXJ1Q92949 421 aa15.64■□□□□ 0.09
CLN3-236ENST00000568558 TATDN2Q93075 761 aa15.64■□□□□ 0.09
CLN3-236ENST00000568558 PIWIL1Q96J94 861 aaKnown RBP15.64■□□□□ 0.09
CLN3-236ENST00000568558 MKRN2Q9H000 416 aaKnown RBP15.64■□□□□ 0.09
CLN3-236ENST00000568558 PRDM16Q9HAZ2 1276 aa15.64■□□□□ 0.09
CLN3-236ENST00000568558 MARCH2Q9P0N8 246 aa15.64■□□□□ 0.09
CLN3-236ENST00000568558 ZMIZ1Q9ULJ6 1067 aa15.64■□□□□ 0.09
CLN3-236ENST00000568558 STRIP2Q9ULQ0 834 aa15.64■□□□□ 0.09
CLN3-236ENST00000568558 TMEM131Q92545 1883 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 FAM208BQ5VWN6 2430 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 SLC12A8A0AV02 714 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 CETN3O15182 167 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 HYAL3O43820 417 aaPredicted RBP15.63■□□□□ 0.09
CLN3-236ENST00000568558 CYBBP04839 570 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 SYPP08247 313 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 CD59P13987 128 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 CD6P30203 668 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 TKTL1P51854 596 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 SLC8A3P57103 927 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 SIM1P81133 766 aaPredicted RBP15.63■□□□□ 0.09
CLN3-236ENST00000568558 EIF4HQ15056 248 aaKnown RBP15.63■□□□□ 0.09
CLN3-236ENST00000568558 CBWD6Q4V339 395 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 CBWD3Q5JTY5 395 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 CBWD5Q5RIA9 395 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 SYCP2LQ5T4T6 812 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 PM20D1Q6GTS8 502 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 BHLHA9Q7RTU4 235 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 FAM217AQ8IXS0 508 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 RBBP8NLQ8NC74 664 aaPredicted RBP15.63■□□□□ 0.09
CLN3-236ENST00000568558 PLD4Q96BZ4 506 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 ULBP1Q9BZM6 244 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 DNAAF2Q9NVR5 837 aaKnown RBP15.63■□□□□ 0.09
CLN3-236ENST00000568558 USP36Q9P275 1121 aaKnown RBP15.63■□□□□ 0.09
CLN3-236ENST00000568558 SUSD2Q9UGT4 822 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 TSPAN16Q9UKR8 245 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 CLEC4EQ9ULY5 219 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 COQ4Q9Y3A0 265 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 NEUROG3Q9Y4Z2 214 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 ATP6V1DQ9Y5K8 247 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 NYNRINQ9P2P1 1898 aaKnown RBP15.63■□□□□ 0.09
CLN3-236ENST00000568558 ZZEF1O43149 2961 aa15.63■□□□□ 0.09
CLN3-236ENST00000568558 NUMA1Q14980 2115 aa15.62■□□□□ 0.09
CLN3-236ENST00000568558 TMEM8BA6NDV4 472 aa15.62■□□□□ 0.09
CLN3-236ENST00000568558 KCNJ18B7U540 433 aa15.62■□□□□ 0.09
CLN3-236ENST00000568558 TULP2O00295 520 aa15.62■□□□□ 0.09
CLN3-236ENST00000568558 XPO1O14980 1071 aaKnown RBP15.62■□□□□ 0.09
CLN3-236ENST00000568558 GJB3O75712 270 aa15.62■□□□□ 0.09
CLN3-236ENST00000568558 ZBED1O96006 694 aa15.62■□□□□ 0.09
CLN3-236ENST00000568558 PDE4CQ08493 712 aa15.62■□□□□ 0.09
CLN3-236ENST00000568558 BECN1Q14457 450 aa15.62■□□□□ 0.09
CLN3-236ENST00000568558 ZNF234Q14588 700 aa15.62■□□□□ 0.09
CLN3-236ENST00000568558 GOLGA7BQ2TAP0 167 aa15.62■□□□□ 0.09
CLN3-236ENST00000568558 PLEKHG6Q3KR16 790 aa15.62■□□□□ 0.09
CLN3-236ENST00000568558 WDR45BQ5MNZ6 344 aa15.62■□□□□ 0.09
CLN3-236ENST00000568558 TCERG1LQ5VWI1 586 aa15.62■□□□□ 0.09
CLN3-236ENST00000568558 DDI1Q8WTU0 396 aa15.62■□□□□ 0.09
CLN3-236ENST00000568558 TOE1Q96GM8 510 aaKnown RBP15.62■□□□□ 0.09
CLN3-236ENST00000568558 SLC2A11Q9BYW1 496 aa15.62■□□□□ 0.09
CLN3-236ENST00000568558 GDPD2Q9HCC8 539 aa15.62■□□□□ 0.09
CLN3-236ENST00000568558 ITM2CQ9NQX7 267 aa15.62■□□□□ 0.09
CLN3-236ENST00000568558 ELOVL2Q9NXB9 296 aa15.62■□□□□ 0.09
CLN3-236ENST00000568558 WSB2Q9NYS7 404 aaPredicted RBP15.62■□□□□ 0.09
CLN3-236ENST00000568558 SLC16A3O15427 465 aaKnown RBP15.61■□□□□ 0.09
CLN3-236ENST00000568558 GNSP15586 552 aa15.61■□□□□ 0.09
CLN3-236ENST00000568558 MAOBP27338 520 aa15.61■□□□□ 0.09
CLN3-236ENST00000568558 PRCPP42785 496 aa15.61■□□□□ 0.09
CLN3-236ENST00000568558 COPAP53621 1224 aa15.61■□□□□ 0.09
CLN3-236ENST00000568558 BCAT1P54687 386 aa15.61■□□□□ 0.09
CLN3-236ENST00000568558 FAM193AP78312 1265 aa15.61■□□□□ 0.09
CLN3-236ENST00000568558 BST2Q10589 180 aaKnown RBP15.61■□□□□ 0.09
CLN3-236ENST00000568558 PNOCQ13519 176 aa15.61■□□□□ 0.09
CLN3-236ENST00000568558 CUL2Q13617 745 aa15.61■□□□□ 0.09
CLN3-236ENST00000568558 E2F5Q15329 346 aa15.61■□□□□ 0.09
CLN3-236ENST00000568558 TRIP4Q15650 581 aaPredicted RBP15.61■□□□□ 0.09
CLN3-236ENST00000568558 SGO2Q562F6 1265 aa15.61■□□□□ 0.09
CLN3-236ENST00000568558 DCAF17Q5H9S7 520 aaPredicted RBP15.61■□□□□ 0.09
CLN3-236ENST00000568558 TMEM215Q68D42 235 aa15.61■□□□□ 0.09
CLN3-236ENST00000568558 TMPRSS6Q8IU80 811 aa15.61■□□□□ 0.09
CLN3-236ENST00000568558 ZC3H3Q8IXZ2 948 aaKnown RBP15.61■□□□□ 0.09
CLN3-236ENST00000568558 DNASE2BQ8WZ79 361 aa15.61■□□□□ 0.09
CLN3-236ENST00000568558 NDRG1Q92597 394 aaKnown RBP15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms