RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 TRIML1Q8N9V2 468 aa16.49■□□□□ 0.23
CLK3-211ENST00000563297 ENGASEQ8NFI3 743 aa16.49■□□□□ 0.23
CLK3-211ENST00000563297 SPATA20Q8TB22 786 aa16.49■□□□□ 0.23
CLK3-211ENST00000563297 TSG101Q99816 390 aa16.49■□□□□ 0.23
CLK3-211ENST00000563297 ULBP1Q9BZM6 244 aa16.49■□□□□ 0.23
CLK3-211ENST00000563297 TSPAN16Q9UKR8 245 aa16.49■□□□□ 0.23
CLK3-211ENST00000563297 STRIP2Q9ULQ0 834 aa16.49■□□□□ 0.23
CLK3-211ENST00000563297 CLEC4EQ9ULY5 219 aa16.49■□□□□ 0.23
CLK3-211ENST00000563297 FRYQ5TBA9 3013 aa16.49■□□□□ 0.23
CLK3-211ENST00000563297 XPO1O14980 1071 aaKnown RBP16.48■□□□□ 0.23
CLK3-211ENST00000563297 NPC1O15118 1278 aa16.48■□□□□ 0.23
CLK3-211ENST00000563297 SLC16A3O15427 465 aaKnown RBP16.48■□□□□ 0.23
CLK3-211ENST00000563297 TOP3BO95985 862 aaKnown RBP16.48■□□□□ 0.23
CLK3-211ENST00000563297 IL12RB1P42701 662 aa16.48■□□□□ 0.23
CLK3-211ENST00000563297 GFPT1Q06210 699 aaPredicted RBP16.48■□□□□ 0.23
CLK3-211ENST00000563297 FOXC1Q12948 553 aa16.48■□□□□ 0.23
CLK3-211ENST00000563297 SEMA3BQ13214 749 aa16.48■□□□□ 0.23
CLK3-211ENST00000563297 TRIP4Q15650 581 aaPredicted RBP16.48■□□□□ 0.23
CLK3-211ENST00000563297 GOLGA7BQ2TAP0 167 aa16.48■□□□□ 0.23
CLK3-211ENST00000563297 FUT11Q495W5 492 aa16.48■□□□□ 0.23
CLK3-211ENST00000563297 SGO2Q562F6 1265 aa16.48■□□□□ 0.23
CLK3-211ENST00000563297 PIP4P1Q86T03 277 aa16.48■□□□□ 0.23
CLK3-211ENST00000563297 METTL3Q86U44 580 aaKnown RBP16.48■□□□□ 0.23
CLK3-211ENST00000563297 FAM217AQ8IXS0 508 aa16.48■□□□□ 0.23
CLK3-211ENST00000563297 ERCC4Q92889 916 aaPredicted RBP16.48■□□□□ 0.23
CLK3-211ENST00000563297 HSPA12BQ96MM6 686 aa16.48■□□□□ 0.23
CLK3-211ENST00000563297 ITM2CQ9NQX7 267 aa16.48■□□□□ 0.23
CLK3-211ENST00000563297 ELOVL2Q9NXB9 296 aa16.48■□□□□ 0.23
CLK3-211ENST00000563297 UPK3BL1B0FP48 263 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 UPK3BL2E5RIL1 263 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 NDUFS2O75306 463 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 CYBBP04839 570 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 VDRP11473 427 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 SPINK2P20155 84 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 ZNF132P52740 706 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 BCAT1P54687 386 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 BST2Q10589 180 aaKnown RBP16.47■□□□□ 0.23
CLK3-211ENST00000563297 LRMPQ12912 555 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 TMEM215Q68D42 235 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 KIAA1324Q6UXG2 1013 aaKnown RBP16.47■□□□□ 0.23
CLK3-211ENST00000563297 RABEPKQ7Z6M1 372 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 UBR7Q8N806 425 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 RBBP8NLQ8NC74 664 aaPredicted RBP16.47■□□□□ 0.23
CLK3-211ENST00000563297 UBA3Q8TBC4 463 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 DDI1Q8WTU0 396 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 UCMAQ8WVF2 138 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 SLC35C1Q96A29 364 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 PLD4Q96BZ4 506 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 GTPBP2Q9BX10 602 aaKnown RBP16.47■□□□□ 0.23
CLK3-211ENST00000563297 SLC2A11Q9BYW1 496 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 MKRN2Q9H000 416 aaKnown RBP16.47■□□□□ 0.23
CLK3-211ENST00000563297 SLC32A1Q9H598 525 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 PRDM16Q9HAZ2 1276 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 LRRC4Q9HBW1 653 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 OLA1Q9NTK5 396 aaKnown RBP16.47■□□□□ 0.23
CLK3-211ENST00000563297 HESX1Q9UBX0 185 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 ARMCX3Q9UH62 379 aaPredicted RBP16.47■□□□□ 0.23
CLK3-211ENST00000563297 SFMBT1Q9UHJ3 866 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 PCDH15Q96QU1 1955 aa16.47■□□□□ 0.23
CLK3-211ENST00000563297 KNL1Q8NG31 2342 aa16.46■□□□□ 0.23
CLK3-211ENST00000563297 TRIM49BA6NDI0 452 aa16.46■□□□□ 0.23
CLK3-211ENST00000563297 YJEFN3A6XGL0 299 aa16.46■□□□□ 0.23
CLK3-211ENST00000563297 E7ENQ6 273 aa16.46■□□□□ 0.23
CLK3-211ENST00000563297 ARHGAP33O14559 1287 aa16.46■□□□□ 0.23
CLK3-211ENST00000563297 SMC2O95347 1197 aa16.46■□□□□ 0.23
CLK3-211ENST00000563297 PROS1P07225 676 aa16.46■□□□□ 0.23
CLK3-211ENST00000563297 CD19P15391 556 aa16.46■□□□□ 0.23
CLK3-211ENST00000563297 ATXN3P54252 364 aaPredicted RBP16.46■□□□□ 0.23
CLK3-211ENST00000563297 YWHAEP62258 255 aaKnown RBP16.46■□□□□ 0.23
CLK3-211ENST00000563297 LRRC63Q05C16 580 aa16.46■□□□□ 0.23
CLK3-211ENST00000563297 ADIGQ0VDE8 80 aa16.46■□□□□ 0.23
CLK3-211ENST00000563297 ZNF234Q14588 700 aa16.46■□□□□ 0.23
CLK3-211ENST00000563297 STARD3Q14849 445 aa16.46■□□□□ 0.23
CLK3-211ENST00000563297 PKDCCQ504Y2 493 aa16.46■□□□□ 0.23
CLK3-211ENST00000563297 BSPRYQ5W0U4 402 aa16.46■□□□□ 0.23
CLK3-211ENST00000563297 ANKS1BQ7Z6G8 1248 aa16.46■□□□□ 0.23
CLK3-211ENST00000563297 FMNL3Q8IVF7 1028 aa16.46■□□□□ 0.23
CLK3-211ENST00000563297 WSB2Q9NYS7 404 aaPredicted RBP16.46■□□□□ 0.23
CLK3-211ENST00000563297 KIAA1257Q9ULG3 409 aa16.46■□□□□ 0.23
CLK3-211ENST00000563297 CKAP5Q14008 2032 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 CFAP47Q6ZTR5 3102 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 GOLGA6L4A6NEF3 574 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 C1QTNF9BB2RNN3 333 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 KCNJ18B7U540 433 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 O00370 1275 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 TIMM44O43615 452 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 TSPAN3O60637 253 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 GABBR2O75899 941 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 C1QTNF9P0C862 333 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 MAOBP27338 520 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 CD6P30203 668 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 MPPE1Q53F39 396 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 SYCP2LQ5T4T6 812 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 TMPRSS6Q8IU80 811 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 RGL4Q8IZJ4 473 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 HDDC3Q8N4P3 179 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 MINDY1Q8N5J2 469 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 OR2I1PQ8NGU4 316 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 RNF139Q8WU17 664 aa16.45■□□□□ 0.22
CLK3-211ENST00000563297 SORCS1Q8WY21 1168 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms