RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 ABI2Q9NYB9 513 aaPredicted RBP12.35□□□□□ -0.43
LDLR-212ENST00000560467 CTTNBP2NLQ9P2B4 639 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 RALYQ9UKM9 306 aaKnown RBP12.35□□□□□ -0.43
LDLR-212ENST00000560467 TSPAN16Q9UKR8 245 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 SLC8A2Q9UPR5 921 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 SCINQ9Y6U3 715 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 CYP1A1P04798 512 aaPredicted RBP12.34□□□□□ -0.43
LDLR-212ENST00000560467 HAPLN1P10915 354 aaPredicted RBP12.34□□□□□ -0.43
LDLR-212ENST00000560467 HMGA1P17096 107 aaKnown RBP12.34□□□□□ -0.43
LDLR-212ENST00000560467 MPLP40238 635 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 GALCP54803 685 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 PSMC1P62191 440 aaKnown RBP12.34□□□□□ -0.43
LDLR-212ENST00000560467 CENPCQ03188 943 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 BST2Q10589 180 aaKnown RBP12.34□□□□□ -0.43
LDLR-212ENST00000560467 RUNX3Q13761 415 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 INTS6LQ5JSJ4 861 aaKnown RBP12.34□□□□□ -0.43
LDLR-212ENST00000560467 PLA2G2CQ5R387 149 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 PPP1R26Q5T8A7 1209 aaPredicted RBP12.34□□□□□ -0.43
LDLR-212ENST00000560467 SDHAF4Q5VUM1 108 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 TXNDC8Q6A555 127 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 PHF13Q86YI8 300 aaPredicted RBP12.34□□□□□ -0.43
LDLR-212ENST00000560467 SYCE1Q8N0S2 351 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 MAB21L3Q8N8X9 362 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 C12orf29Q8N999 325 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 C2orf15Q8WU43 125 aaKnown RBP12.34□□□□□ -0.43
LDLR-212ENST00000560467 UBE2Q2Q8WVN8 375 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 TFAP2BQ92481 460 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 ZNF653Q96CK0 615 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 C18orf8Q96DM3 657 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 SMARCD1Q96GM5 515 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 SYT11Q9BT88 431 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 DPEP3Q9H4B8 488 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 PARVAQ9NVD7 372 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 TMLHEQ9NVH6 421 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 UVRAGQ9P2Y5 699 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 HMGXB4Q9UGU5 601 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 GTF3C4Q9UKN8 822 aa12.34□□□□□ -0.43
LDLR-212ENST00000560467 A0A0A6YYK5 440 aaPredicted RBP12.33□□□□□ -0.44
LDLR-212ENST00000560467 CCDC163A0A0D9SF12 145 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 MACROD2A1Z1Q3 448 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 BTNL10A8MVZ5 291 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 TRDMT1O14717 391 aaKnown RBP12.33□□□□□ -0.44
LDLR-212ENST00000560467 DCLK1O15075 740 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 PJA2O43164 708 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 SART1O43290 800 aaKnown RBP12.33□□□□□ -0.44
LDLR-212ENST00000560467 ZNF500O60304 480 aaPredicted RBP12.33□□□□□ -0.44
LDLR-212ENST00000560467 F11P03951 625 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 UNGP13051 313 aaPredicted RBP12.33□□□□□ -0.44
LDLR-212ENST00000560467 AVPR1AP37288 418 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 GNG11P61952 73 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 NOMO3P69849 1222 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 SHC2P98077 582 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 PLK5Q496M5 336 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 DENND1BQ6P3S1 775 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 DCUN1D2Q6PH85 259 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 OSTM1Q86WC4 334 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 ZDHHC17Q8IUH5 632 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 SIX6OS1Q8N1H7 587 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 C1orf131Q8NDD1 294 aaKnown RBP12.33□□□□□ -0.44
LDLR-212ENST00000560467 TRIM58Q8NG06 486 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 UBA3Q8TBC4 463 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 RFFLQ8WZ73 363 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 GOLGA1Q92805 767 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 HSFY1Q96LI6 401 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 PCDHB18PQ96TA0 734 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 DUSP16Q9BY84 665 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 LRRC4Q9HBW1 653 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 CYLDQ9NQC7 956 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 CNOT8Q9UFF9 292 aaKnown RBP12.33□□□□□ -0.44
LDLR-212ENST00000560467 MAGED2Q9UNF1 606 aaPredicted RBP12.33□□□□□ -0.44
LDLR-212ENST00000560467 PCDHB5Q9Y5E4 795 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 PCDHGA5Q9Y5G8 931 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 IGF2RP11717 2491 aa12.33□□□□□ -0.44
LDLR-212ENST00000560467 PDCD11Q14690 1871 aaKnown RBP12.32□□□□□ -0.44
LDLR-212ENST00000560467 ZFYVE26Q68DK2 2539 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 FRYQ5TBA9 3013 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 ATG13O75143 517 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 TADA3O75528 432 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 AP1G2O75843 785 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 KCNK5O95279 499 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 CALCAP01258 141 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 CCDC130P13994 396 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 MMP8P22894 467 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 CDH5P33151 784 aaPredicted RBP12.32□□□□□ -0.44
LDLR-212ENST00000560467 GRIK1P39086 918 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 ZNF268Q14587 947 aaPredicted RBP12.32□□□□□ -0.44
LDLR-212ENST00000560467 CCDC142Q17RM4 750 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 DNAJC24Q6P3W2 148 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 FAM171BQ6P995 826 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 MMS22LQ6ZRQ5 1243 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 MCOLN2Q8IZK6 566 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 TTC16Q8NEE8 873 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 SPPL2BQ8TCT7 592 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 EZH1Q92800 747 aaPredicted RBP12.32□□□□□ -0.44
LDLR-212ENST00000560467 FUBP3Q96I24 572 aaKnown RBP eCLIP12.32□□□□□ -0.44
LDLR-212ENST00000560467 C11orf70Q9BRQ4 267 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 TRIM62Q9BVG3 475 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 UBXN6Q9BZV1 441 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 THAP2Q9H0W7 228 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 ABCB6Q9NP58 842 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms