RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 LEMD2Q8NC56 503 aa6.69□□□□□ -1.34
SPG11-221ENST00000560299 SMRP1Q8NCR6 262 aa6.69□□□□□ -1.34
SPG11-221ENST00000560299 GPR152Q8TDT2 470 aa6.69□□□□□ -1.34
SPG11-221ENST00000560299 GDPD5Q8WTR4 605 aa6.69□□□□□ -1.34
SPG11-221ENST00000560299 SLC22A17Q8WUG5 538 aa6.69□□□□□ -1.34
SPG11-221ENST00000560299 EDEM1Q92611 657 aa6.69□□□□□ -1.34
SPG11-221ENST00000560299 KRT35Q92764 455 aa6.69□□□□□ -1.34
SPG11-221ENST00000560299 CASP10Q92851 521 aa6.69□□□□□ -1.34
SPG11-221ENST00000560299 PSMG2Q969U7 264 aa6.69□□□□□ -1.34
SPG11-221ENST00000560299 MYRFLQ96LU7 910 aa6.69□□□□□ -1.34
SPG11-221ENST00000560299 ASB2Q96Q27 587 aa6.69□□□□□ -1.34
SPG11-221ENST00000560299 CRISPLD1Q9H336 500 aa6.69□□□□□ -1.34
SPG11-221ENST00000560299 TLE6Q9H808 572 aa6.69□□□□□ -1.34
SPG11-221ENST00000560299 PRDM16Q9HAZ2 1276 aa6.69□□□□□ -1.34
SPG11-221ENST00000560299 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.69□□□□□ -1.34
SPG11-221ENST00000560299 ZDHHC7Q9NXF8 308 aa6.69□□□□□ -1.34
SPG11-221ENST00000560299 GMIPQ9P107 970 aa6.69□□□□□ -1.34
SPG11-221ENST00000560299 EFR3BQ9Y2G0 817 aa6.69□□□□□ -1.34
SPG11-221ENST00000560299 MTCL1Q9Y4B5 1905 aaKnown RBP6.69□□□□□ -1.34
SPG11-221ENST00000560299 SPTBN5Q9NRC6 3674 aaKnown RBP6.69□□□□□ -1.34
SPG11-221ENST00000560299 MYO16Q9Y6X6 1858 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 GREB1Q4ZG55 1949 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 SYNJ2BP-COX16A0A087WUM0 186 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 EFCAB8A8MWE9 144 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 ZNF487B1APH4 448 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 CCDC188H7C350 402 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 KRIT1O00522 736 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 RIOK3O14730 519 aaKnown RBP6.68□□□□□ -1.34
SPG11-221ENST00000560299 ZNF185O15231 689 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 FANCGO15287 622 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 TLR5O60602 858 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 CLASP2O75122 1294 aaKnown RBP6.68□□□□□ -1.34
SPG11-221ENST00000560299 ZMYND10O75800 440 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 CSPG5O95196 566 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 APOEP02649 317 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 FYNP06241 537 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 HNRNPA1P09651 372 aaKnown RBP eCLIP6.68□□□□□ -1.34
SPG11-221ENST00000560299 NUDT7P0C024 238 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 ZDHHC11BP0C7U3 371 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 SPATA31D3P0C874 917 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 RARAP10276 462 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 PYGMP11217 842 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 BMP1P13497 986 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 RARGP13631 454 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 ZFXP17010 805 aaPredicted RBP6.68□□□□□ -1.34
SPG11-221ENST00000560299 PTPN2P17706 415 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 PFKLP17858 780 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 IGFBP4P22692 258 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 KDELR1P24390 212 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 ADRA1BP35368 520 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 CXCR3P49682 368 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 TUBP50607 506 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 CDH6P55285 790 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 HDAC4P56524 1084 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 TAS2R40P59535 323 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 USP46P62068 366 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 COG7P83436 770 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 SLC25A11Q02978 314 aaKnown RBP6.68□□□□□ -1.34
SPG11-221ENST00000560299 NNTQ13423 1086 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 SMAD4Q13485 552 aaKnown RBP6.68□□□□□ -1.34
SPG11-221ENST00000560299 MTMR3Q13615 1198 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 SMAD2Q15796 467 aaKnown RBP6.68□□□□□ -1.34
SPG11-221ENST00000560299 SMTNL2Q2TAL5 461 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 TJAP1Q5JTD0 557 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 C10orf120Q5SQS8 335 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 SH3PXD2AQ5TCZ1 1133 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 SNX30Q5VWJ9 437 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 TRNP1Q6NT89 227 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 MSANTD2Q6P1R3 559 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 KLHDC10Q6PID8 442 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 SPATA31D4Q6ZUB0 917 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 BHLHA9Q7RTU4 235 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 SCD5Q86SK9 330 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 FAM131BQ86XD5 332 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 SLC13A5Q86YT5 568 aaPredicted RBP6.68□□□□□ -1.34
SPG11-221ENST00000560299 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.68□□□□□ -1.34
SPG11-221ENST00000560299 UNC45BQ8IWX7 931 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 ATP6V0D2Q8N8Y2 350 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 TTC13Q8NBP0 860 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.68□□□□□ -1.34
SPG11-221ENST00000560299 DQX1Q8TE96 717 aaKnown RBP6.68□□□□□ -1.34
SPG11-221ENST00000560299 COG1Q8WTW3 980 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 SUSD6Q92537 303 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 UBXN4Q92575 508 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 HSPH1Q92598 858 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 MRPS31Q92665 395 aaKnown RBP6.68□□□□□ -1.34
SPG11-221ENST00000560299 ALG3Q92685 438 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 NTAN1Q96AB6 310 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 RNF25Q96BH1 459 aaPredicted RBP6.68□□□□□ -1.34
SPG11-221ENST00000560299 FAM161BQ96MY7 647 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 RUNDC3BQ96NL0 473 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 CARD6Q9BX69 1037 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 CALN1Q9BXU9 219 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 OSBPL8Q9BZF1 889 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 SMOC2Q9H3U7 446 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 DHX35Q9H5Z1 703 aaKnown RBP6.68□□□□□ -1.34
SPG11-221ENST00000560299 UBE2ZQ9H832 354 aaPredicted RBP6.68□□□□□ -1.34
SPG11-221ENST00000560299 CERS4Q9HA82 394 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 ASAH2Q9NR71 780 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms