RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 FAM227BQ96M60 508 aa5.35□□□□□ -1.55
VPS13C-208ENST00000559119 SELENOOQ9BVL4 669 aa5.35□□□□□ -1.55
VPS13C-208ENST00000559119 TBC1D23Q9NUY8 699 aa5.35□□□□□ -1.55
VPS13C-208ENST00000559119 PCDHA12Q9UN75 941 aa5.35□□□□□ -1.55
VPS13C-208ENST00000559119 C4orf47A7E2U8 309 aa5.34□□□□□ -1.55
VPS13C-208ENST00000559119 PRPF4O43172 522 aaKnown RBP eCLIP5.34□□□□□ -1.55
VPS13C-208ENST00000559119 MGEA5O60502 916 aa5.34□□□□□ -1.55
VPS13C-208ENST00000559119 UGDHO60701 494 aa5.34□□□□□ -1.55
VPS13C-208ENST00000559119 NGFRP08138 427 aa5.34□□□□□ -1.55
VPS13C-208ENST00000559119 TBXAS1P24557 533 aaPredicted RBP5.34□□□□□ -1.55
VPS13C-208ENST00000559119 PGGT1BP53609 377 aa5.34□□□□□ -1.55
VPS13C-208ENST00000559119 IGBP1P78318 339 aa5.34□□□□□ -1.55
VPS13C-208ENST00000559119 MTAPQ13126 283 aa5.34□□□□□ -1.55
VPS13C-208ENST00000559119 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.34□□□□□ -1.55
VPS13C-208ENST00000559119 C18orf65Q6ZTR6 163 aa5.34□□□□□ -1.55
VPS13C-208ENST00000559119 RNF26Q9BY78 433 aaPredicted RBP5.34□□□□□ -1.55
VPS13C-208ENST00000559119 SLC25A32Q9H2D1 315 aa5.34□□□□□ -1.55
VPS13C-208ENST00000559119 MOV10Q9HCE1 1003 aaKnown RBP5.34□□□□□ -1.55
VPS13C-208ENST00000559119 ABHD10Q9NUJ1 306 aa5.34□□□□□ -1.55
VPS13C-208ENST00000559119 ASNSD1Q9NWL6 643 aa5.34□□□□□ -1.55
VPS13C-208ENST00000559119 ANAPC4Q9UJX5 808 aa5.34□□□□□ -1.55
VPS13C-208ENST00000559119 ICKQ9UPZ9 632 aa5.34□□□□□ -1.55
VPS13C-208ENST00000559119 TRBV5-3A0A0A0MS03 114 aa5.33□□□□□ -1.56
VPS13C-208ENST00000559119 SLC28A2O43868 658 aa5.33□□□□□ -1.56
VPS13C-208ENST00000559119 MT-ND5P03915 603 aa5.33□□□□□ -1.56
VPS13C-208ENST00000559119 IDUAP35475 653 aa5.33□□□□□ -1.56
VPS13C-208ENST00000559119 PTGR1Q14914 329 aa5.33□□□□□ -1.56
VPS13C-208ENST00000559119 ACOX1Q15067 660 aa5.33□□□□□ -1.56
VPS13C-208ENST00000559119 INPP5JQ15735 1006 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-208ENST00000559119 AASDHQ4L235 1098 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-208ENST00000559119 DARS2Q6PI48 645 aaKnown RBP5.33□□□□□ -1.56
VPS13C-208ENST00000559119 TRAPPC11Q7Z392 1133 aa5.33□□□□□ -1.56
VPS13C-208ENST00000559119 SUN3Q8TAQ9 357 aa5.33□□□□□ -1.56
VPS13C-208ENST00000559119 KAT2BQ92831 832 aa5.33□□□□□ -1.56
VPS13C-208ENST00000559119 ZNF479Q96JC4 524 aa5.33□□□□□ -1.56
VPS13C-208ENST00000559119 SNX22Q96L94 193 aa5.33□□□□□ -1.56
VPS13C-208ENST00000559119 SENP7Q9BQF6 1050 aa5.33□□□□□ -1.56
VPS13C-208ENST00000559119 IPO11Q9UI26 975 aaKnown RBP5.33□□□□□ -1.56
VPS13C-208ENST00000559119 PCDHB2Q9Y5E7 798 aa5.33□□□□□ -1.56
VPS13C-208ENST00000559119 A0A1W2PPC1 479 aa5.32□□□□□ -1.56
VPS13C-208ENST00000559119 DUSP1P28562 367 aa5.32□□□□□ -1.56
VPS13C-208ENST00000559119 RNF44Q7L0R7 432 aa5.32□□□□□ -1.56
VPS13C-208ENST00000559119 DCP1BQ8IZD4 617 aaKnown RBP5.32□□□□□ -1.56
VPS13C-208ENST00000559119 AKAP1Q92667 903 aaKnown RBP eCLIP5.32□□□□□ -1.56
VPS13C-208ENST00000559119 CELF1Q92879 486 aaKnown RBP5.32□□□□□ -1.56
VPS13C-208ENST00000559119 MSLNLQ96KJ4 702 aa5.32□□□□□ -1.56
VPS13C-208ENST00000559119 TTLL2Q9BWV7 592 aa5.32□□□□□ -1.56
VPS13C-208ENST00000559119 FZD3Q9NPG1 666 aa5.32□□□□□ -1.56
VPS13C-208ENST00000559119 AGO2Q9UKV8 859 aaKnown RBP5.32□□□□□ -1.56
VPS13C-208ENST00000559119 ZNF335Q9H4Z2 1342 aaPredicted RBP5.31□□□□□ -1.56
VPS13C-208ENST00000559119 A6NNZ2 444 aa5.31□□□□□ -1.56
VPS13C-208ENST00000559119 GOLIM4O00461 696 aa5.31□□□□□ -1.56
VPS13C-208ENST00000559119 HOXD12P35452 270 aa5.31□□□□□ -1.56
VPS13C-208ENST00000559119 PBX1P40424 430 aa5.31□□□□□ -1.56
VPS13C-208ENST00000559119 KCNJ4P48050 445 aa5.31□□□□□ -1.56
VPS13C-208ENST00000559119 POLD2P49005 469 aa5.31□□□□□ -1.56
VPS13C-208ENST00000559119 P2RX3P56373 397 aa5.31□□□□□ -1.56
VPS13C-208ENST00000559119 KCNJ12Q14500 433 aa5.31□□□□□ -1.56
VPS13C-208ENST00000559119 ASIC2Q16515 512 aa5.31□□□□□ -1.56
VPS13C-208ENST00000559119 KIAA0753Q2KHM9 967 aa5.31□□□□□ -1.56
VPS13C-208ENST00000559119 FAM102BQ5T8I3 360 aa5.31□□□□□ -1.56
VPS13C-208ENST00000559119 PDXDC1Q6P996 788 aa5.31□□□□□ -1.56
VPS13C-208ENST00000559119 FAM156AQ8NDB6 213 aa5.31□□□□□ -1.56
VPS13C-208ENST00000559119 THSD1Q9NS62 852 aa5.31□□□□□ -1.56
VPS13C-208ENST00000559119 PRYO14603 147 aa5.3□□□□□ -1.56
VPS13C-208ENST00000559119 MATN1P21941 496 aa5.3□□□□□ -1.56
VPS13C-208ENST00000559119 HYAL1Q12794 435 aa5.3□□□□□ -1.56
VPS13C-208ENST00000559119 FHL3Q13643 280 aa5.3□□□□□ -1.56
VPS13C-208ENST00000559119 DLGAP5Q15398 846 aa5.3□□□□□ -1.56
VPS13C-208ENST00000559119 ODR4Q5SWX8 454 aa5.3□□□□□ -1.56
VPS13C-208ENST00000559119 Q6ZTC4 211 aa5.3□□□□□ -1.56
VPS13C-208ENST00000559119 SRGAP1Q7Z6B7 1085 aa5.3□□□□□ -1.56
VPS13C-208ENST00000559119 FBXL14Q8N1E6 418 aa5.3□□□□□ -1.56
VPS13C-208ENST00000559119 ABHD5Q8WTS1 349 aa5.3□□□□□ -1.56
VPS13C-208ENST00000559119 MEIS3Q99687 375 aa5.3□□□□□ -1.56
VPS13C-208ENST00000559119 NTPCRQ9BSD7 190 aaKnown RBP5.3□□□□□ -1.56
VPS13C-208ENST00000559119 HTATIP2Q9BUP3 242 aa5.3□□□□□ -1.56
VPS13C-208ENST00000559119 RBM38Q9H0Z9 239 aaKnown RBP5.3□□□□□ -1.56
VPS13C-208ENST00000559119 HEYLQ9NQ87 328 aaPredicted RBP5.3□□□□□ -1.56
VPS13C-208ENST00000559119 SELENONQ9NZV5 590 aa5.3□□□□□ -1.56
VPS13C-208ENST00000559119 ANXA2P07355 339 aaKnown RBP5.29□□□□□ -1.56
VPS13C-208ENST00000559119 HOXB2P14652 356 aa5.29□□□□□ -1.56
VPS13C-208ENST00000559119 DRD1P21728 446 aa5.29□□□□□ -1.56
VPS13C-208ENST00000559119 PEX2P28328 305 aa5.29□□□□□ -1.56
VPS13C-208ENST00000559119 NDUFS1P28331 727 aa5.29□□□□□ -1.56
VPS13C-208ENST00000559119 IGHMBP2P38935 993 aaKnown RBP5.29□□□□□ -1.56
VPS13C-208ENST00000559119 FAM193AP78312 1265 aa5.29□□□□□ -1.56
VPS13C-208ENST00000559119 GAB1Q13480 694 aa5.29□□□□□ -1.56
VPS13C-208ENST00000559119 BFSP2Q13515 415 aa5.29□□□□□ -1.56
VPS13C-208ENST00000559119 GATA5Q9BWX5 397 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-208ENST00000559119 TRIM2Q9C040 744 aa5.29□□□□□ -1.56
VPS13C-208ENST00000559119 ARHGAP39Q9C0H5 1083 aa5.29□□□□□ -1.56
VPS13C-208ENST00000559119 NOTCH4Q99466 2003 aa5.29□□□□□ -1.56
VPS13C-208ENST00000559119 A0A0G2JK05 382 aa5.28□□□□□ -1.56
VPS13C-208ENST00000559119 KIR2DS5A0A0G2JLQ3 304 aa5.28□□□□□ -1.56
VPS13C-208ENST00000559119 KIR2DS3K7RE56 304 aa5.28□□□□□ -1.56
VPS13C-208ENST00000559119 CCNT2O60583 730 aaKnown RBP5.28□□□□□ -1.56
VPS13C-208ENST00000559119 ZBED1O96006 694 aa5.28□□□□□ -1.56
VPS13C-208ENST00000559119 ENO1P06733 434 aaKnown RBP5.28□□□□□ -1.56
VPS13C-208ENST00000559119 RPL17P18621 184 aaKnown RBP5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms