RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 ZNF302Q9NR11 478 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 GJD2Q9UKL4 321 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 DRG1Q9Y295 367 aaKnown RBP11.25□□□□□ -0.61
USP3-206ENST00000558157 SF3B1O75533 1304 aaKnown RBP eCLIP11.25□□□□□ -0.611e-6■■■■■ 175.4
USP3-206ENST00000558157 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.25□□□□□ -0.61
USP3-206ENST00000558157 ATMINO43313 823 aaPredicted RBP11.25□□□□□ -0.61
USP3-206ENST00000558157 HOXC6P09630 235 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 MYBPC1Q00872 1141 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 FASTKD3Q14CZ7 662 aaKnown RBP11.25□□□□□ -0.61
USP3-206ENST00000558157 RABGAP1LQ5R372 815 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 ACAD10Q6JQN1 1059 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 ZFP1Q6P2D0 407 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 PADI6Q6TGC4 694 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 REM2Q8IYK8 340 aaPredicted RBP11.25□□□□□ -0.61
USP3-206ENST00000558157 PQLC1Q8N2U9 271 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 EXD1Q8NHP7 514 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 TMEM174Q8WUU8 243 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 DCAKDQ8WVC6 231 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 BORCS5Q969J3 196 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 PCYT2Q99447 389 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 GPR20Q99678 358 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 APBA2Q99767 749 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 ANAPC7Q9UJX3 599 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 MYH11P35749 1972 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 IGKV6D-21A0A0A0MT36 114 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 FUOMA2VDF0 154 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 SOBPA7XYQ1 873 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 CLASP2O75122 1294 aaKnown RBP11.24□□□□□ -0.61
USP3-206ENST00000558157 STBD1O95210 358 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 ATP6V1B1P15313 513 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 PRDX6P30041 224 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 TCF7P36402 384 aaPredicted RBP11.24□□□□□ -0.61
USP3-206ENST00000558157 ALDH3B2P48448 385 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 TMED10P49755 219 aaKnown RBP11.24□□□□□ -0.61
USP3-206ENST00000558157 COPAP53621 1224 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 FCGRTP55899 365 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 NOP14P78316 857 aaKnown RBP11.24□□□□□ -0.61
USP3-206ENST00000558157 FMO1Q01740 532 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 ARHGAP1Q07960 439 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 INAQ16352 499 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 HIF1AQ16665 826 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 HSDL1Q3SXM5 330 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 RNASEH2BQ5TBB1 312 aaKnown RBP11.24□□□□□ -0.61
USP3-206ENST00000558157 CPNE8Q86YQ8 564 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 CRLF3Q8IUI8 442 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 RHOT1Q8IXI2 618 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 CASP10Q92851 521 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 SPATA33Q96N06 139 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 PRPF18Q99633 342 aaKnown RBP11.24□□□□□ -0.61
USP3-206ENST00000558157 HERPUD2Q9BSE4 406 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 VPS45Q9NRW7 570 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 ANKEF1Q9NU02 776 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 SEPT9Q9UHD8 586 aaPredicted RBP11.24□□□□□ -0.61
USP3-206ENST00000558157 CDH22Q9UJ99 828 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 COQ6Q9Y2Z9 468 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 AP4B1Q9Y6B7 739 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 DENND3A2RUS2 1198 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 CAPN8A6NHC0 703 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 PRR5-ARHGAP8B1AHC4 643 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 GOLGA8TH3BQL2 631 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 H3BSA7 217 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 NOP56O00567 594 aaKnown RBP11.24□□□□□ -0.61
USP3-206ENST00000558157 CRTAMO95727 393 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 MYL4P12829 197 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 GPX6P59796 221 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 TUBA4AP68366 448 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 ARHGAP8P85298 464 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 TGFBIQ15582 683 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 XKR9Q5GH70 373 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 SEPT1Q8WYJ6 367 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 TTC17Q96AE7 1141 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 FAM111AQ96PZ2 611 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 NUF2Q9BZD4 464 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 INO80BQ9C086 356 aaPredicted RBP11.24□□□□□ -0.61
USP3-206ENST00000558157 ABHD16BQ9H3Z7 469 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 FAM96AQ9H5X1 160 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 KCND2Q9NZV8 630 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 HESX1Q9UBX0 185 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 BCAP29Q9UHQ4 241 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 CNOT11Q9UKZ1 510 aaKnown RBP11.24□□□□□ -0.61
USP3-206ENST00000558157 POMPQ9Y244 141 aa11.24□□□□□ -0.61
USP3-206ENST00000558157 MAFBQ9Y5Q3 323 aaPredicted RBP11.24□□□□□ -0.61
USP3-206ENST00000558157 GPC6Q9Y625 555 aaPredicted RBP11.24□□□□□ -0.61
USP3-206ENST00000558157 CLUHO75153 1309 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 SDR42E2A6NKP2 422 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 H0YJX3 145 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 LIASO43766 372 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 FAM13AO94988 1023 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 SGPL1O95470 568 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 CAPNS1P04632 268 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 C8BP07358 591 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 TRIM49P0CI25 452 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 TRIM49CP0CI26 452 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 HMOX2P30519 316 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 BCAP31P51572 246 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 ARSEP51690 589 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 NEK2P51955 445 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 CAP1Q01518 475 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 C16orf72Q14CZ0 275 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 ZNF829Q3KNS6 432 aaPredicted RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms