RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 SMNDC1O75940 238 aaKnown RBP eCLIP13.32□□□□□ -0.28
LDLR-207ENST00000558013 TGDSO95455 350 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 TGM2P21980 687 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 OCRLQ01968 901 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 TNFAIP2Q03169 654 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 FAM187BQ17R55 369 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 PPM1JQ5JR12 505 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 TAPT1Q6NXT6 567 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 MTHFD1LQ6UB35 978 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 EXOC8Q8IYI6 725 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 SLC25A41Q8N5S1 370 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 UCMAQ8WVF2 138 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 CSPG4P5Q96PW8 444 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 C16orf70Q9BSU1 422 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 SHCBP1LQ9BZQ2 653 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 MEI4A8MW99 385 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 A8MXQ7 604 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 DNAJC6O75061 913 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 GSRP00390 522 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 TSHRP16473 764 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 HOXA11P31270 313 aaPredicted RBP13.32□□□□□ -0.28
LDLR-207ENST00000558013 MAGEA3P43357 314 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 SLC26A2P50443 739 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 RPL10AP62906 217 aaKnown RBP13.32□□□□□ -0.28
LDLR-207ENST00000558013 BLMHQ13867 455 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 SNX30Q5VWJ9 437 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 SULF1Q8IWU6 871 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.32□□□□□ -0.28
LDLR-207ENST00000558013 GPC2Q8N158 579 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 TEX9Q8N6V9 391 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 DEPDC1BQ8WUY9 529 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 TBCBQ99426 244 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 OSBPL1AQ9BXW6 950 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 NFKBIZQ9BYH8 718 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 DCLRE1BQ9H816 532 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 SETD4Q9NVD3 440 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 ZNF358Q9NW07 568 aa13.32□□□□□ -0.28
LDLR-207ENST00000558013 A0A0G2JMZ2 1700 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 LRRC37A2A6NM11 1700 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 PRR5-ARHGAP8B1AHC4 643 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 I3L4J1 428 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 SPTLC1O15269 473 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 SLC25A27O95847 323 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 PGM1P36871 562 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 ABCG1P45844 678 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 ARHGAP8P85298 464 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 CCDC6Q16204 474 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 STKLD1Q8NE28 680 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 MOCOSQ96EN8 888 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 ATXN7L3BQ96GX2 97 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 ZNF778Q96MU6 729 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 FAM161BQ96MY7 647 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 RILPQ96NA2 401 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 NXF3Q9H4D5 531 aaKnown RBP13.31□□□□□ -0.28
LDLR-207ENST00000558013 ACSS2Q9NR19 701 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 SEPT10Q9P0V9 454 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 SIRPGQ9P1W8 387 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 LTBP3Q9NS15 1303 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 A6NJR5 290 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 FAM159BA6NKW6 160 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 CAPN14A8MX76 684 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 H3BRB1 525 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 SPAG6O75602 509 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 ALDOAP04075 364 aaKnown RBP13.31□□□□□ -0.28
LDLR-207ENST00000558013 NCBP2-AS2Q69YL0 99 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 GSDMBQ8TAX9 411 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 DNAJC9Q8WXX5 260 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 TUT1Q9H6E5 874 aaKnown RBP13.31□□□□□ -0.28
LDLR-207ENST00000558013 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.31□□□□□ -0.281e-6■■■□□ 15.9
LDLR-207ENST00000558013 CACNG4Q9UBN1 327 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 C2CD2Q9Y426 696 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 PPP2R3BQ9Y5P8 575 aa13.31□□□□□ -0.28
LDLR-207ENST00000558013 USP12O75317 370 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 ARRB2P32121 409 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 PEX19P40855 299 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 PGGT1BP53609 377 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 MUM1Q2TAK8 710 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 ZNF484Q5JVG2 852 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 POU5F2Q8N7G0 328 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.3□□□□□ -0.28
LDLR-207ENST00000558013 OPTNQ96CV9 577 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 ZNF670Q9BS34 389 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 TRIM6Q9C030 488 aaPredicted RBP13.3□□□□□ -0.28
LDLR-207ENST00000558013 MAF1Q9H063 256 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 EMCNQ9ULC0 261 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 BRCA1P38398 1863 aaKnown RBP13.3□□□□□ -0.28
LDLR-207ENST00000558013 DPPA5A6NC42 116 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 DPYSL4O14531 572 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 MDM4O15151 490 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 ADCY6O43306 1168 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 KRT38O76015 456 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 SORBS2O94875 1100 aaKnown RBP13.3□□□□□ -0.28
LDLR-207ENST00000558013 BPGMP07738 259 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 MGAT1P26572 445 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 SPDYAQ5MJ70 313 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 HEATR6Q6AI08 1181 aaKnown RBP13.3□□□□□ -0.28
LDLR-207ENST00000558013 CAPRIN2Q6IMN6 1127 aaKnown RBP13.3□□□□□ -0.28
LDLR-207ENST00000558013 CTU1Q7Z7A3 348 aaKnown RBP13.3□□□□□ -0.28
LDLR-207ENST00000558013 KBTBD2Q8IY47 623 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 HACE1Q8IYU2 909 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms