RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 SPTLC1O15269 473 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 ALOX15BO15296 676 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 STRNO43815 780 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 TSPAN3O60637 253 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 HNRNPCL1O60812 293 aaKnown RBP16.13■□□□□ 0.17
CUX1-211ENST00000546411 CYP1A1P04798 512 aaPredicted RBP16.13■□□□□ 0.17
CUX1-211ENST00000546411 IRF1P10914 325 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 PTPN4P29074 926 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 GDF10P55107 478 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 UGP2Q16851 508 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 ST13P4Q8IZP2 240 aaPredicted RBP16.13■□□□□ 0.17
CUX1-211ENST00000546411 MTMR14Q8NCE2 650 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 ICA1LQ8NDH6 482 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 NRDE2Q9H7Z3 1164 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 AURKCQ9UQB9 309 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 RUVBL2Q9Y230 463 aaKnown RBP16.13■□□□□ 0.17
CUX1-211ENST00000546411 ARIH2O95376 493 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 FRA10AC1Q70Z53 315 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 YTHDF3Q7Z739 585 aaKnown RBP16.13■□□□□ 0.17
CUX1-211ENST00000546411 OR52K1Q8NGK4 314 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 SENP8Q96LD8 212 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 FGD4Q96M96 766 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 HACD3Q9P035 362 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 MYH11P35749 1972 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 ENTPD5O75356 428 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 KRT16P08779 473 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 ZCCHC18P0CG32 403 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 XPAP23025 273 aaPredicted RBP16.13■□□□□ 0.17
CUX1-211ENST00000546411 MGAT5Q09328 741 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 TRIML2Q8N7C3 387 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.13■□□□□ 0.177e-7■■■■■ 55.8
CUX1-211ENST00000546411 MINDY3Q9H8M7 445 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 PACSIN3Q9UKS6 424 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 CDY2AQ9Y6F7 541 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 CDY1Q9Y6F8 540 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 EFEMP1Q12805 493 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 FNBP1LQ5T0N5 605 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 PMF1Q6P1K2 205 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 XYLT1Q86Y38 959 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.12■□□□□ 0.17
CUX1-211ENST00000546411 CPT1BQ92523 772 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 CMTM5Q96DZ9 223 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 FICDQ9BVA6 458 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 RBM22Q9NW64 420 aaKnown RBP eCLIP16.12■□□□□ 0.17
CUX1-211ENST00000546411 PHGDHO43175 533 aaKnown RBP16.12■□□□□ 0.17
CUX1-211ENST00000546411 KLHL2O95198 593 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 PGK1P00558 417 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 YBX3P16989 372 aaKnown RBP eCLIP16.12■□□□□ 0.175e-6■■■□□ 19.1
CUX1-211ENST00000546411 NME5P56597 212 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 CYTH1Q15438 398 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 C4orf22Q6V702 233 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 GTF3C2Q8WUA4 911 aaPredicted RBP16.12■□□□□ 0.17
CUX1-211ENST00000546411 ZFP42Q96MM3 310 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 CAMKK2Q96RR4 588 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 APBA2Q99767 749 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 NIFKQ9BYG3 293 aaKnown RBP16.12■□□□□ 0.17
CUX1-211ENST00000546411 ILKAPQ9H0C8 392 aaPredicted RBP16.12■□□□□ 0.17
CUX1-211ENST00000546411 ACSS3Q9H6R3 686 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 B4GALT4O60513 344 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 VAPBO95292 243 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 ODC1P11926 461 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 KCNA3P22001 575 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 SCNN1GP51170 649 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 PLK1P53350 603 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 RABGGTBP53611 331 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 ATXN1P54253 815 aaKnown RBP16.12■□□□□ 0.17
CUX1-211ENST00000546411 ANKRD20A4Q4UJ75 823 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 ANKRD20A2Q5SQ80 823 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 ANKRD20A1Q5TYW2 823 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 ISLR2Q6UXK2 745 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 CRYGNQ8WXF5 182 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 TLCD1Q96CP7 247 aa16.12■□□□□ 0.17
CUX1-211ENST00000546411 A8MUI8 341 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 SUPT7LO94864 414 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 BST1Q10588 318 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 TWF1Q12792 350 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 ACCSLQ4AC99 568 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 OTOAQ7RTW8 1153 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 EGFL8Q99944 293 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 GPR88Q9GZN0 384 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 CATSPERBQ9H7T0 1116 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 NDFIP2Q9NV92 336 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 TPST1O60507 370 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 PDK4Q16654 411 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 SLC45A4Q5BKX6 768 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 TMTC4Q5T4D3 741 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 NUP93Q8N1F7 819 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 STKLD1Q8NE28 680 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 TBC1D10AQ9BXI6 508 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 TKTL2Q9H0I9 626 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 ACSS2Q9NR19 701 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 TULP2O00295 520 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 PDE5AO76074 875 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 PDAP1Q13442 181 aaKnown RBP16.11■□□□□ 0.17
CUX1-211ENST00000546411 ACAP1Q15027 740 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 SCUBE1Q8IWY4 988 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 FITM2Q8N6M3 262 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 SLC4A11Q8NBS3 891 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 C7orf43Q8WVR3 580 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 OXNAD1Q96HP4 312 aaPredicted RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms