RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	FAM50B	Q9Y247	325 aa		12.37	□□□□□ -0.43
DDB1-223	ENST00000543658	USP15	Q9Y4E8	981 aa	Predicted RBP	12.37	□□□□□ -0.43
DDB1-223	ENST00000543658	ALG6	Q9Y672	507 aa		12.37	□□□□□ -0.43
DDB1-223	ENST00000543658	MIF4GD	A9UHW6	222 aa	Known RBP	12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	KIF2A	O00139	706 aa	Predicted RBP	12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	PSTPIP1	O43586	416 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	LRCH4	O75427	683 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	OLFM2	O95897	454 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	FTCD	O95954	541 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	MOCS2	O96007	188 aa	Predicted RBP	12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	TFE3	P19532	575 aa	Predicted RBP	12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	MIP	P30301	263 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	AIF1	P55008	147 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	PITX1	P78337	314 aa	Predicted RBP	12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	SLC7A9	P82251	487 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	RING1	Q06587	406 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	EFHC2	Q5JST6	749 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	SLFN11	Q7Z7L1	901 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	NPAS3	Q8IXF0	933 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	RHOT1	Q8IXI2	618 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	SLC35F6	Q8N357	371 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	MAFA	Q8NHW3	353 aa	Predicted RBP	12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	UBE2Q2	Q8WVN8	375 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	CENPI	Q92674	756 aa	Predicted RBP	12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	NT5C3B	Q969T7	300 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	ACSF2	Q96CM8	615 aa	Predicted RBP	12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	C16orf45	Q96MC5	204 aa	Predicted RBP	12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	CYP2S1	Q96SQ9	504 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	DCLK3	Q9C098	648 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	RNF38	Q9H0F5	515 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	GOLPH3	Q9H4A6	298 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	ZWILCH	Q9H900	591 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	PIGV	Q9NUD9	493 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	GDE1	Q9NZC3	331 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	PCSK1N	Q9UHG2	260 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	CDH7	Q9ULB5	785 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	CDH23	Q9H251	3354 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	BRWD1	Q9NSI6	2320 aa		12.36	□□□□□ -0.43
DDB1-223	ENST00000543658	CCDC66	A2RUB6	948 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	MOSPD3	O75425	235 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	ENDOD1	O94919	500 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	IGLV3-25	P01717	112 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	SLC11A2	P49281	568 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	DNA2	P51530	1060 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	ATXN1	P54253	815 aa	Known RBP	12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	HDAC4	P56524	1084 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	PPP2R5D	Q14738	602 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	SH3PXD2A	Q5TCZ1	1133 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	OTUD1	Q5VV17	481 aa	Predicted RBP	12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	DAB2IP	Q5VWQ8	1189 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	OTOP3	Q7RTS5	596 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	LRRC57	Q8N9N7	239 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	HSPH1	Q92598	858 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	FGF13	Q92913	245 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	DDX50	Q9BQ39	737 aa	Known RBP	12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	KLF16	Q9BXK1	252 aa	Predicted RBP	12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	SLC46A2	Q9BY10	475 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	IRX2	Q9BZI1	471 aa	Predicted RBP	12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	TKTL2	Q9H0I9	626 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	POMK	Q9H5K3	350 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	TDP1	Q9NUW8	608 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	DDX56	Q9NY93	547 aa	Known RBP	12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	CDH22	Q9UJ99	828 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	ARHGAP26	Q9UNA1	814 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	AP4E1	Q9UPM8	1137 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	ZNF510	Q9Y2H8	683 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	HYOU1	Q9Y4L1	999 aa		12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	12.35	□□□□□ -0.43
DDB1-223	ENST00000543658	DOCK4	Q8N1I0	1966 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	LEFTY2	O00292	366 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	MBTPS2	O43462	519 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	KRT1	P04264	644 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	TUBB4A	P04350	444 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	CORO1A	P31146	461 aa	Known RBP	12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	CASQ1	P31415	396 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	CETN2	P41208	172 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	CXCR3	P49682	368 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	KRT81	Q14533	505 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	RPS6KA1	Q15418	735 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	SMTNL2	Q2TAL5	461 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	PUS10	Q3MIT2	529 aa	Known RBP	12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	BOLA3	Q53S33	107 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	ZC3H12A	Q5D1E8	599 aa	Known RBP	12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	ERMARD	Q5T6L9	678 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	ACBD5	Q5T8D3	534 aa	Predicted RBP	12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	BNIPL	Q7Z465	357 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	POLN	Q7Z5Q5	900 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	NT5DC3	Q86UY8	548 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	ARID3B	Q8IVW6	561 aa	Predicted RBP	12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	CELF5	Q8N6W0	485 aa	Known RBP	12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	TDRD5	Q8NAT2	981 aa	Known RBP	12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	SH3RF2	Q8TEC5	729 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	TEKT4	Q8WW24	435 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	NTAN1	Q96AB6	310 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	E2F7	Q96AV8	911 aa		12.34	□□□□□ -0.43
DDB1-223	ENST00000543658	BTN2A3P	Q96KV6	586 aa		12.34	□□□□□ -0.43

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