RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 KBTBD13C9JR72 458 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 MGRN1O60291 552 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 ZNF623O75123 536 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 F9P00740 461 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 APOEP02649 317 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 MT-ND3P03897 115 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 SNRPAP09012 282 aaKnown RBP10.21□□□□□ -0.78
SS18-205ENST00000542420 FAM200BP0CF97 657 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 SKIP12755 728 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 CCNB1P14635 433 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 KRT4P19013 534 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 AKAP5P24588 427 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 DNAJB2P25686 324 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 ADORA2BP29275 332 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 SULT1E1P49888 294 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 TMEM62Q0P6H9 643 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 PTK7Q13308 1070 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 SEPT7Q16181 437 aaKnown RBP10.21□□□□□ -0.78
SS18-205ENST00000542420 CA9Q16790 459 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 RAB41Q5JT25 222 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 FYB2Q5VWT5 728 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 SH2D5Q6ZV89 423 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 PIGZQ86VD9 579 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 OSTM1Q86WC4 334 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 LRRC6Q86X45 466 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 GSDMBQ8TAX9 411 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 GDAP1Q8TB36 358 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 ACMSDQ8TDX5 336 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 WNT8BQ93098 351 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 EBNA1BP2Q99848 306 aaKnown RBP10.21□□□□□ -0.78
SS18-205ENST00000542420 TUBB6Q9BUF5 446 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 LRRC4Q9HBW1 653 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 ZFYVE28Q9HCC9 887 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 IGSF9Q9P2J2 1179 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 PHTF1Q9UMS5 762 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 CHMP2BQ9UQN3 213 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 PCDHA11Q9Y5I1 949 aa10.21□□□□□ -0.78
SS18-205ENST00000542420 NLRC5Q86WI3 1866 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 FAM159BA6NKW6 160 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 GOLGA8MH3BSY2 632 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 AP3B1O00203 1094 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 CYB561D2O14569 222 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 PTGESO14684 152 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 GPR182O15218 404 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 GRAP2O75791 330 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 KRT38O76015 456 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 ALDH1A2O94788 518 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 PCSK1P29120 753 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 CYP2C18P33260 490 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 RPA3P35244 121 aaPredicted RBP10.2□□□□□ -0.78
SS18-205ENST00000542420 SOX4Q06945 474 aaPredicted RBP10.2□□□□□ -0.78
SS18-205ENST00000542420 SETDB1Q15047 1291 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 GLRA4Q5JXX5 417 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 TWF2Q6IBS0 349 aaKnown RBP10.2□□□□□ -0.78
SS18-205ENST00000542420 CGB2Q6NT52 195 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 LVRNQ6Q4G3 990 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 CAND1Q86VP6 1230 aaKnown RBP10.2□□□□□ -0.78
SS18-205ENST00000542420 TMEM130Q8N3G9 435 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 CCDC63Q8NA47 563 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 ZNF483Q8TF39 744 aaPredicted RBP10.2□□□□□ -0.78
SS18-205ENST00000542420 HTR3CQ8WXA8 447 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 UROC1Q96N76 676 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 CXCL16Q9H2A7 254 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 ETNK1Q9HBU6 452 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 DTLQ9NZJ0 730 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 ZC3H7BQ9UGR2 993 aaKnown RBP10.2□□□□□ -0.78
SS18-205ENST00000542420 DSEQ9UL01 958 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 RPL26L1Q9UNX3 145 aaKnown RBP10.2□□□□□ -0.78
SS18-205ENST00000542420 HES2Q9Y543 173 aa10.2□□□□□ -0.78
SS18-205ENST00000542420 ZNF638Q14966 1978 aaKnown RBP10.2□□□□□ -0.78
SS18-205ENST00000542420 FRMPD3Q5JV73 1810 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 ERI2A8K979 691 aaKnown RBP10.19□□□□□ -0.78
SS18-205ENST00000542420 IGF2BP3O00425 579 aaKnown RBP eCLIP10.19□□□□□ -0.78
SS18-205ENST00000542420 C2CD2LO14523 706 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 INPPL1O15357 1258 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 NEBLO76041 1014 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 CYP11A1P05108 521 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 TROVE2P10155 538 aaKnown RBP eCLIP10.19□□□□□ -0.78
SS18-205ENST00000542420 LCP1P13796 627 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 LMO2P25791 158 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 CALRP27797 417 aaKnown RBP10.19□□□□□ -0.78
SS18-205ENST00000542420 CCNHP51946 323 aaPredicted RBP10.19□□□□□ -0.78
SS18-205ENST00000542420 YWHAGP61981 247 aaKnown RBP eCLIP10.19□□□□□ -0.78
SS18-205ENST00000542420 MGAT3Q09327 533 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 PARP6Q2NL67 630 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 LRRC8BQ6P9F7 803 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 KCNT2Q6UVM3 1135 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 CLEC20AQ6ZU45 233 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 DEFB106AQ8N104 65 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 SIX6OS1Q8N1H7 587 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 CFAP61Q8NHU2 1237 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 ZNF75CPQ92670 426 aaPredicted RBP10.19□□□□□ -0.78
SS18-205ENST00000542420 TTC17Q96AE7 1141 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 SIGLEC10Q96LC7 697 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 B3GNT5Q9BYG0 378 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 SENP6Q9GZR1 1112 aaPredicted RBP10.19□□□□□ -0.78
SS18-205ENST00000542420 TSPYL2Q9H2G4 693 aaPredicted RBP10.19□□□□□ -0.78
SS18-205ENST00000542420 SPC25Q9HBM1 224 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 CSNK1G1Q9HCP0 422 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 FAM105AQ9NUU6 356 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms