RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 SEPT11Q9NVA2 429 aaKnown RBP9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 PSMD13Q9UNM6 376 aa9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 AGTPBP1Q9UPW5 1226 aa9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 RIPK3Q9Y572 518 aa9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 SMCHD1A6NHR9 2005 aa9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 CFAP99D6REC4 459 aa9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 GOLGA8RI6L899 631 aa9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 CFBP00751 764 aa9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 NR4A1P22736 598 aa9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 CLK2P49760 499 aaKnown RBP9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 MOGQ16653 247 aa9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 TCHHL1Q5QJ38 904 aaPredicted RBP9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 HP1BP3Q5SSJ5 553 aaPredicted RBP9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 RARS2Q5T160 578 aaKnown RBP9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 IZUMO3Q5VZ72 239 aa9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 CCDC81Q6ZN84 652 aa9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 CD101Q93033 1021 aa9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 FAR2Q96K12 515 aa9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 PSD2Q9BQI7 771 aa9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 SYT11Q9BT88 431 aa9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 ANLNQ9NQW6 1124 aa9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 PSMC3IPQ9P2W1 217 aaPredicted RBP9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 CDH22Q9UJ99 828 aa9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 ZNF214Q9UL59 606 aaPredicted RBP9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 PCDHGA11Q9Y5H2 935 aa9.78□□□□□ -0.84
CTNNA1-243ENST00000540387 GOLGA8CPA6NN73 597 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 TBKBP1A7MCY6 615 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 TOMM70O94826 608 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 CD247P20963 164 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 ADSLP30566 484 aaPredicted RBP9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 SOX5P35711 763 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 ZNF157P51786 506 aaPredicted RBP9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 TSPY1Q01534 308 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 UBAP2LQ14157 1087 aaKnown RBP9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 TBCCQ15814 346 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 KRT25Q7Z3Z0 450 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 GPR141Q7Z602 305 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 ANKS1BQ7Z6G8 1248 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 TICAM1Q8IUC6 712 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 SLC38A6Q8IZM9 456 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 SLC15A4Q8N697 577 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 Q8N9G6 341 aaPredicted RBP9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 TBCKQ8TEA7 893 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 SNX29Q8TEQ0 813 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 KLF6Q99612 283 aaPredicted RBP9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 FERMT1Q9BQL6 677 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 CRNNQ9UBG3 495 aaPredicted RBP9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 CHORDC1Q9UHD1 332 aaPredicted RBP9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 CDC14AQ9UNH5 594 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 SATB2Q9UPW6 733 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 DNAJC16Q9Y2G8 782 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 MRPL11Q9Y3B7 192 aaKnown RBP9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 RNF11Q9Y3C5 154 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 CCL15-CCL14A0A0B4J2E2 113 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 SFI1A8K8P3 1242 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 ZNF701M0R085 212 aaPredicted RBP9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 PSMD11O00231 422 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 KPNA4O00629 521 aaPredicted RBP9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 NFIBO00712 420 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 EDIL3O43854 480 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 H6PDO95479 791 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 FDX1P10109 184 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 PSMC3P17980 439 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 TNFAIP3P21580 790 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 GTF2A2P52657 109 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 PDIA2Q13087 525 aaKnown RBP9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 SELENBP1Q13228 472 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 FASTKD3Q14CZ7 662 aaKnown RBP9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 CCL15Q16663 113 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 C4orf22Q6V702 233 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 HPS6Q86YV9 775 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 ZC3H3Q8IXZ2 948 aaKnown RBP9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 EFCAB3Q8N7B9 438 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 EXD1Q8NHP7 514 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 BRI3BPQ8WY22 251 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 RAD54LQ92698 747 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 RNF38Q9H0F5 515 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 KCTD10Q9H3F6 313 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 C10orf88Q9H8K7 445 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 VPS37BQ9H9H4 285 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 GCNT4Q9P109 453 aa9.77□□□□□ -0.85
CTNNA1-243ENST00000540387 FSCN2O14926 492 aa9.76□□□□□ -0.85
CTNNA1-243ENST00000540387 CCNT1O60563 726 aaKnown RBP9.76□□□□□ -0.85
CTNNA1-243ENST00000540387 KLHL41O60662 606 aa9.76□□□□□ -0.85
CTNNA1-243ENST00000540387 TBCAO75347 108 aaKnown RBP9.76□□□□□ -0.85
CTNNA1-243ENST00000540387 IL1BP01584 269 aa9.76□□□□□ -0.85
CTNNA1-243ENST00000540387 ABCB1P08183 1280 aaPredicted RBP9.76□□□□□ -0.85
CTNNA1-243ENST00000540387 NELFEP18615 380 aaKnown RBP9.76□□□□□ -0.85
CTNNA1-243ENST00000540387 NR2F2P24468 414 aa9.76□□□□□ -0.85
CTNNA1-243ENST00000540387 BNIP3Q12983 259 aa9.76□□□□□ -0.85
CTNNA1-243ENST00000540387 OXA1LQ15070 435 aa9.76□□□□□ -0.85
CTNNA1-243ENST00000540387 CRY1Q16526 586 aa9.76□□□□□ -0.85
CTNNA1-243ENST00000540387 CCNG2Q16589 344 aa9.76□□□□□ -0.85
CTNNA1-243ENST00000540387 LETM2Q2VYF4 491 aa9.76□□□□□ -0.85
CTNNA1-243ENST00000540387 LSM12Q3MHD2 195 aaKnown RBP9.76□□□□□ -0.85
CTNNA1-243ENST00000540387 DCAF17Q5H9S7 520 aaPredicted RBP9.76□□□□□ -0.85
CTNNA1-243ENST00000540387 PLEKHA7Q6IQ23 1121 aa9.76□□□□□ -0.85
CTNNA1-243ENST00000540387 LBX2Q6XYB7 198 aa9.76□□□□□ -0.85
CTNNA1-243ENST00000540387 NEK10Q6ZWH5 1172 aa9.76□□□□□ -0.85
CTNNA1-243ENST00000540387 EEPD1Q7L9B9 569 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms