RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 PTPRJQ12913 1337 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 OGTO15294 1046 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 HCRTO43612 131 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 SYNCRIPO60506 623 aaKnown RBP6.85□□□□□ -1.31
CD44-237ENST00000534082 TSPAN3O60637 253 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 USP12O75317 370 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 SEMA4FO95754 770 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 MAPTP10636 758 aaKnown RBP6.85□□□□□ -1.31
CD44-237ENST00000534082 IRF1P10914 325 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 TYRP14679 529 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 MUTP22033 750 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 ACP1P24666 158 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 ANXA13P27216 316 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 KRT2P35908 639 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 PPP3CCP48454 512 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 DGKGP49619 791 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 LIG4P49917 911 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 BCAT1P54687 386 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 EVCP57679 992 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 GRIN1Q05586 938 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 ECM1Q16610 540 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 ZSCAN23Q3MJ62 389 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 SFMBT2Q5VUG0 894 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 VSTM1Q6UX27 236 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 C4orf50Q6ZRC1 276 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 CD302Q8IX05 232 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 EXTL1Q92935 676 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 TNFRSF25Q93038 417 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 MYLPFQ96A32 169 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 CCDC97Q96F63 343 aaPredicted RBP6.85□□□□□ -1.31
CD44-237ENST00000534082 ZNF560Q96MR9 790 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 SLC6A18Q96N87 628 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 DEPDC7Q96QD5 511 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 DUSP9Q99956 384 aaKnown RBP6.85□□□□□ -1.31
CD44-237ENST00000534082 ORAI3Q9BRQ5 295 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 RUSC1Q9BVN2 902 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 BBS2Q9BXC9 721 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 C17orf75Q9HAS0 396 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 LRRC4CQ9HCJ2 640 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 DPP3Q9NY33 737 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 EHD2Q9NZN4 543 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 CENPEQ02224 2701 aa6.85□□□□□ -1.31
CD44-237ENST00000534082 TP53BP1Q12888 1972 aaPredicted RBP6.85□□□□□ -1.31
CD44-237ENST00000534082 FIGNL2A6NMB9 653 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 SFI1A8K8P3 1242 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 HNRNPDLO14979 420 aaKnown RBP6.84□□□□□ -1.31
CD44-237ENST00000534082 NPC1O15118 1278 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 COCHO43405 550 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 HUS1O60921 280 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 PPFIA2O75334 1257 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 CSO75390 466 aaKnown RBP6.84□□□□□ -1.31
CD44-237ENST00000534082 ITGB2P05107 769 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 SFTPCP11686 197 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 POU3F2P20265 443 aaPredicted RBP6.84□□□□□ -1.31
CD44-237ENST00000534082 PCSK1P29120 753 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 CCT6AP40227 531 aaKnown RBP6.84□□□□□ -1.31
CD44-237ENST00000534082 PNPLA4P41247 253 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 ARRB1P49407 418 aaPredicted RBP6.84□□□□□ -1.31
CD44-237ENST00000534082 RACK1P63244 317 aaKnown RBP6.84□□□□□ -1.31
CD44-237ENST00000534082 ASIC1P78348 528 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 E2F1Q01094 437 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 DHX9Q08211 1270 aaKnown RBP6.84□□□□□ -1.31
CD44-237ENST00000534082 TAF10Q12962 218 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 CLN3Q13286 438 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 ENPP2Q13822 863 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 NUMA1Q14980 2115 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 ARL13BQ3SXY8 428 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 SGO2Q562F6 1265 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 IGF2-ASQ6U949 168 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 OSTM1Q86WC4 334 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 ADGRF2Q8IZF7 708 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 TMEM86AQ8N2M4 240 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 WBP2Q969T9 261 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 CEP295NLQ96MC4 621 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 SLITRK1Q96PX8 696 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 OCSTAMPQ9BR26 566 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 NTPCRQ9BSD7 190 aaKnown RBP6.84□□□□□ -1.31
CD44-237ENST00000534082 MSTO1Q9BUK6 570 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 EPN3Q9H201 632 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 LHX5Q9H2C1 402 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 BRMS1Q9HCU9 246 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 GDF3Q9NR23 364 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 DDX19AQ9NUU7 478 aaKnown RBP6.84□□□□□ -1.31
CD44-237ENST00000534082 MARK1Q9P0L2 795 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 WDR35Q9P2L0 1181 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 STK17AQ9UEE5 414 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 PLEKHB1Q9UF11 243 aaPredicted RBP6.84□□□□□ -1.31
CD44-237ENST00000534082 CPSF3Q9UKF6 684 aaKnown RBP6.84□□□□□ -1.31
CD44-237ENST00000534082 KIAA1024Q9UPX6 916 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 C2CD2Q9Y426 696 aa6.84□□□□□ -1.31
CD44-237ENST00000534082 ICE1Q9Y2F5 2266 aa6.83□□□□□ -1.32
CD44-237ENST00000534082 ATP2C2O75185 946 aa6.83□□□□□ -1.32
CD44-237ENST00000534082 WNT1P04628 370 aa6.83□□□□□ -1.32
CD44-237ENST00000534082 IGHV4-34P06331 123 aa6.83□□□□□ -1.32
CD44-237ENST00000534082 CISD3P0C7P0 127 aa6.83□□□□□ -1.32
CD44-237ENST00000534082 PLS3P13797 630 aa6.83□□□□□ -1.32
CD44-237ENST00000534082 BDNFP23560 247 aa6.83□□□□□ -1.32
CD44-237ENST00000534082 PRKCHP24723 683 aa6.83□□□□□ -1.32
CD44-237ENST00000534082 RBMS1P29558 406 aaKnown RBP6.83□□□□□ -1.32
CD44-237ENST00000534082 CDC25AP30304 524 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms