RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 SYT15Q9BQS2 421 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 EML4Q9HC35 981 aaKnown RBP12.03□□□□□ -0.48
SYNPO-204ENST00000519664 NT5MQ9NPB1 228 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 FBXO6Q9NRD1 293 aaPredicted RBP12.03□□□□□ -0.48
SYNPO-204ENST00000519664 MOSPD1Q9UJG1 213 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 GON4LQ3T8J9 2241 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 EGFRP00533 1210 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 MGAT5Q09328 741 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 MTFR1Q15390 333 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 ABHD15Q6UXT9 468 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 ALLCQ8N6M5 410 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.03□□□□□ -0.48
SYNPO-204ENST00000519664 DCDC2Q9UHG0 476 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 MAFO75444 373 aaPredicted RBP12.03□□□□□ -0.48
SYNPO-204ENST00000519664 PAEPP09466 180 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 MMP8P22894 467 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 CELF3Q5SZQ8 465 aaKnown RBP12.03□□□□□ -0.48
SYNPO-204ENST00000519664 SNX30Q5VWJ9 437 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 RNF219Q5W0B1 726 aaPredicted RBP12.03□□□□□ -0.48
SYNPO-204ENST00000519664 EFCAB3Q8N7B9 438 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 RAET1EQ8TD07 263 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 GIPC2Q8TF65 315 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 SNX19Q92543 992 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 APOL5Q9BWW9 433 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 ULBP1Q9BZM6 244 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 LRRC4CQ9HCJ2 640 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 GGA2Q9UJY4 613 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 ACOT9Q9Y305 439 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 PCDHA2Q9Y5H9 948 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 SLC30A1Q9Y6M5 507 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 A0A096LPK6 155 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 TMEM191CA6NGB0 347 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 SCAMP3O14828 347 aaKnown RBP12.03□□□□□ -0.48
SYNPO-204ENST00000519664 MTSS1O43312 755 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 ZMPSTE24O75844 475 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 STMN1P16949 149 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 CHRNB2P17787 502 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 TPP2P29144 1249 aaPredicted RBP12.03□□□□□ -0.48
SYNPO-204ENST00000519664 CPT1AP50416 773 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 ZRANB3Q5FWF4 1079 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 WSCD1Q658N2 575 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 NDRG1Q92597 394 aaKnown RBP12.03□□□□□ -0.48
SYNPO-204ENST00000519664 PIF1Q9H611 641 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 XPNPEP1Q9NQW7 623 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 PDP2Q9P2J9 529 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 CNTNAP2Q9UHC6 1331 aa12.02□□□□□ -0.48
SYNPO-204ENST00000519664 BUD23O43709 281 aaKnown RBP12.02□□□□□ -0.48
SYNPO-204ENST00000519664 TBC1D12O60347 775 aa12.02□□□□□ -0.48
SYNPO-204ENST00000519664 IL10P22301 178 aa12.02□□□□□ -0.48
SYNPO-204ENST00000519664 MMP13P45452 471 aa12.02□□□□□ -0.48
SYNPO-204ENST00000519664 NRLP54845 237 aa12.02□□□□□ -0.48
SYNPO-204ENST00000519664 IYDQ6PHW0 289 aa12.02□□□□□ -0.48
SYNPO-204ENST00000519664 PHF13Q86YI8 300 aaPredicted RBP12.02□□□□□ -0.48
SYNPO-204ENST00000519664 SIAH1Q8IUQ4 282 aa12.02□□□□□ -0.48
SYNPO-204ENST00000519664 CLEC4DQ8WXI8 215 aa12.02□□□□□ -0.48
SYNPO-204ENST00000519664 TUBGCP3Q96CW5 907 aa12.02□□□□□ -0.48
SYNPO-204ENST00000519664 OXNAD1Q96HP4 312 aaPredicted RBP12.02□□□□□ -0.48
SYNPO-204ENST00000519664 APOPT1Q96IL0 206 aa12.02□□□□□ -0.48
SYNPO-204ENST00000519664 FRMD8P1Q9BZ68 369 aaPredicted RBP12.02□□□□□ -0.48
SYNPO-204ENST00000519664 GOLGA2P5Q9HBQ8 144 aa12.02□□□□□ -0.48
SYNPO-204ENST00000519664 IL1RAPL1Q9NZN1 696 aa12.02□□□□□ -0.48
SYNPO-204ENST00000519664 SYNPO2Q9UMS6 1093 aa12.02□□□□□ -0.48
SYNPO-204ENST00000519664 ARHGAP10A1A4S6 786 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 CLDN5O00501 218 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 ANXA9O76027 345 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 CD48P09326 243 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 ARF4P18085 180 aaPredicted RBP12.02□□□□□ -0.49
SYNPO-204ENST00000519664 BDNFP23560 247 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 EEF1DP29692 281 aaKnown RBP12.02□□□□□ -0.49
SYNPO-204ENST00000519664 HMOX2P30519 316 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 HOXD13P35453 343 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 ROR2Q01974 943 aaKnown RBP12.02□□□□□ -0.49
SYNPO-204ENST00000519664 FUT11Q495W5 492 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 OR52K1Q8NGK4 314 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 NAT9Q9BTE0 207 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 TRIM62Q9BVG3 475 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 TMEM134Q9H6X4 195 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 DMAC2Q9NW81 257 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 CD274Q9NZQ7 290 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 SLC17A7Q9P2U7 560 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 RGPD2P0DJD1 1756 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 C2orf71A6NGG8 1288 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 NPM3O75607 178 aaKnown RBP12.02□□□□□ -0.49
SYNPO-204ENST00000519664 RHOBTB1O94844 696 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 YBX3P16989 372 aaKnown RBP eCLIP12.02□□□□□ -0.49
SYNPO-204ENST00000519664 PSMB4P28070 264 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 GTF2A2P52657 109 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 SLC44A4Q53GD3 710 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 IZUMO2Q6UXV1 221 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 C4orf22Q6V702 233 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 PIGZQ86VD9 579 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 RNF157Q96PX1 679 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 TBC1D10AQ9BXI6 508 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 CASS4Q9NQ75 786 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 ACSS2Q9NR19 701 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 ETNK2Q9NVF9 386 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 GPRC5DQ9NZD1 345 aa12.02□□□□□ -0.49
SYNPO-204ENST00000519664 SLC1A6P48664 564 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 SEL1L3Q68CR1 1132 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 STKLD1Q8NE28 680 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms