RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 SNX17Q15036 470 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 PRAMEF19Q5SWL8 479 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 LRRC8EQ6NSJ5 796 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 USP50Q70EL3 339 aaPredicted RBP13.52□□□□□ -0.25
TCOF1-213ENST00000514442 DDIASQ8IXT1 998 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 ZBTB8BQ8NAP8 495 aaPredicted RBP13.52□□□□□ -0.25
TCOF1-213ENST00000514442 PAFAH2Q99487 392 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 SHCBP1LQ9BZQ2 653 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 CATSPERBQ9H7T0 1116 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 SCHIP1Q9P0W5 487 aaPredicted RBP13.52□□□□□ -0.25
TCOF1-213ENST00000514442 F8W8V4 182 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 ARHGEF9O43307 516 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 LGALS2P05162 132 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 CCDC159P0C7I6 412 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 IL10P22301 178 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 PPP3CAQ08209 521 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 FBXO47Q5MNV8 452 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 TCP10LQ8TDR4 215 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 ZNF606Q8WXB4 792 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 RXFP2Q8WXD0 754 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 TMEM121Q9BTD3 319 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 DCUN1D5Q9BTE7 237 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 ABHD16BQ9H3Z7 469 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 VTA1Q9NP79 307 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 DAPK2Q9UIK4 370 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 DLG5Q8TDM6 1919 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 MEI4A8MW99 385 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 STK25O00506 426 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 ATICP31939 592 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 IMPG1Q17R60 797 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 AAGABQ6PD74 315 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 DDX53Q86TM3 631 aaKnown RBP13.51□□□□□ -0.25
TCOF1-213ENST00000514442 RIOX2Q8IUF8 465 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 TFB1MQ8WVM0 346 aaKnown RBP13.51□□□□□ -0.25
TCOF1-213ENST00000514442 ZNF669Q96BR6 464 aaPredicted RBP13.51□□□□□ -0.25
TCOF1-213ENST00000514442 SLITRK1Q96PX8 696 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 FARP1Q9Y4F1 1045 aaPredicted RBP13.51□□□□□ -0.25
TCOF1-213ENST00000514442 UBIAD1Q9Y5Z9 338 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 CYP3A7-CYP3A51PA0A087WV96 503 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 A6NHS1 94 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 AKAP10O43572 662 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 ATP5BP06576 529 aaKnown RBP13.51□□□□□ -0.25
TCOF1-213ENST00000514442 CYP3A7P24462 503 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 BCAT1P54687 386 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 RBBP7Q16576 425 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 TFDP3Q5H9I0 405 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 GJC2Q5T442 439 aaPredicted RBP13.51□□□□□ -0.25
TCOF1-213ENST00000514442 ADCK1Q86TW2 530 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 CLVS1Q8IUQ0 354 aaPredicted RBP13.51□□□□□ -0.25
TCOF1-213ENST00000514442 MCOLN2Q8IZK6 566 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 ARHGEF38Q9NXL2 777 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 RSL24D1Q9UHA3 163 aaKnown RBP13.51□□□□□ -0.25
TCOF1-213ENST00000514442 SYNPO2Q9UMS6 1093 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 GMEB1Q9Y692 573 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 ZNF839A8K0R7 811 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 SYCE1LA8MT33 242 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 NKRFO15226 690 aaKnown RBP eCLIP13.51□□□□□ -0.25
TCOF1-213ENST00000514442 PMPCBO75439 489 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 APOA1P02647 267 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 TWF1Q12792 350 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 CYGBQ8WWM9 190 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 TMA16Q96EY4 203 aaKnown RBP13.51□□□□□ -0.25
TCOF1-213ENST00000514442 STARD7Q9NQZ5 370 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 USP18Q9UMW8 372 aa13.51□□□□□ -0.25
TCOF1-213ENST00000514442 ASTN1O14525 1302 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 SMAPO00193 183 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 ACKR2O00590 384 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 TBC1D12O60347 775 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 LPIN1Q14693 890 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 TREML2Q5T2D2 321 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 MROH9Q5TGP6 573 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 ZBTB18Q99592 522 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 SLCO1B3Q9NPD5 702 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 GIMAP4Q9NUV9 329 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 TSPAN16Q9UKR8 245 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 AFDNP55196 1824 aaKnown RBP13.5□□□□□ -0.25
TCOF1-213ENST00000514442 ADRB2P07550 413 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 GFAPP14136 432 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 CCNFP41002 786 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 PPIL2Q13356 520 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 PTK6Q13882 451 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 MAPRE2Q15555 327 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 UGCGQ16739 394 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 SPOCD1Q6ZMY3 1216 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 ETNPPLQ8TBG4 499 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 CEP19Q96LK0 163 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 ZMYM2Q9UBW7 1377 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 PYGMP11217 842 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 ADRA1DP25100 572 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 ALDH1A3P47895 512 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 NUDT2P50583 147 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 PLOD1Q02809 727 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-213ENST00000514442 SETD3Q86TU7 594 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-213ENST00000514442 RMND5BQ96G75 393 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-213ENST00000514442 RABGEF1Q9UJ41 708 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 S100A1P23297 94 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 TDRD10Q5VZ19 366 aaKnown RBP13.5□□□□□ -0.25
TCOF1-213ENST00000514442 DEFB128Q7Z7B8 93 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 BRSK2Q8IWQ3 736 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 DEFB107AQ8IZN7 70 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms