RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 MAFO75444 373 aaPredicted RBP9.96□□□□□ -0.82
VCAN-210ENST00000513960 TNNC2P02585 160 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 PRKCBP05771 671 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 ALDH1A3P47895 512 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 NUDT2P50583 147 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 GPAT2Q6NUI2 795 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 GADL1Q6ZQY3 521 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 PTAR1Q7Z6K3 402 aaPredicted RBP9.96□□□□□ -0.82
VCAN-210ENST00000513960 THNSL1Q8IYQ7 743 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 FAM172AQ8WUF8 416 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 DCAKDQ8WVC6 231 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 PPCSQ9HAB8 311 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 ACSS2Q9NR19 701 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 CISHQ9NSE2 258 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 STRIP2Q9ULQ0 834 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 DOLKQ9UPQ8 538 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 CNTN6Q9UQ52 1028 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 FIS1Q9Y3D6 152 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 FER1L6Q2WGJ9 1857 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 KCNN4O15554 427 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 SEC24DO94855 1032 aaPredicted RBP9.96□□□□□ -0.82
VCAN-210ENST00000513960 LSM8O95777 96 aaKnown RBP9.96□□□□□ -0.82
VCAN-210ENST00000513960 TGFB3P10600 412 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 CRABP2P29373 138 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 RPL5P46777 297 aaKnown RBP9.96□□□□□ -0.82
VCAN-210ENST00000513960 SERPINB8P50452 374 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 CCR3P51677 355 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 PKNOX1P55347 436 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 OSTNP61366 133 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 DCTN2Q13561 401 aaKnown RBP9.96□□□□□ -0.82
VCAN-210ENST00000513960 MXD4Q14582 209 aaPredicted RBP9.96□□□□□ -0.82
VCAN-210ENST00000513960 PDK1Q15118 436 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 ZNF699Q32M78 642 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 EML3Q32P44 896 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 TMCO4Q5TGY1 634 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 KLHDC10Q6PID8 442 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 METTL7BQ6UX53 244 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 LBX2Q6XYB7 198 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 AMIGO2Q86SJ2 522 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 PDSS2Q86YH6 399 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 IGDCC3Q8IVU1 814 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 PGBD4Q96DM1 585 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 CSADQ9Y600 493 aa9.96□□□□□ -0.82
VCAN-210ENST00000513960 DOCK5Q9H7D0 1870 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 ADGRA2Q96PE1 1338 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 IGKV6D-21A0A0A0MT36 114 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 TMEM191CA6NGB0 347 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 INO80B-WBP1J3KQ70 363 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 POLR2BP30876 1174 aaKnown RBP9.95□□□□□ -0.82
VCAN-210ENST00000513960 RAP1GDS1P52306 607 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 YWHAEP62258 255 aaKnown RBP9.95□□□□□ -0.82
VCAN-210ENST00000513960 HPCAP84074 193 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 ROR1Q01973 937 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 TAP1Q03518 808 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 TTLL12Q14166 644 aaPredicted RBP9.95□□□□□ -0.82
VCAN-210ENST00000513960 NRF1Q16656 503 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 TMEM259Q4ZIN3 620 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 C6orf52Q5T4I8 152 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 SLC26A11Q86WA9 606 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 EXOC8Q8IYI6 725 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 LRRC71Q8N4P6 559 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 STKLD1Q8NE28 680 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 PPWD1Q96BP3 646 aaKnown RBP9.95□□□□□ -0.82
VCAN-210ENST00000513960 PLEKHG4BQ96PX9 1271 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 INO80BQ9C086 356 aaPredicted RBP9.95□□□□□ -0.82
VCAN-210ENST00000513960 PPP2R3BQ9Y5P8 575 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 DOCK1Q14185 1865 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 hCG_1818297A0A087WSY0 165 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 EDN1P05305 212 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 FGFR3P22607 806 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 TMEM62Q0P6H9 643 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 LAMTOR4Q0VGL1 99 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 PIGHQ14442 188 aaPredicted RBP9.95□□□□□ -0.82
VCAN-210ENST00000513960 TARBP2Q15633 366 aaKnown RBP9.95□□□□□ -0.82
VCAN-210ENST00000513960 LY6KQ17RY6 165 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 FASTKD1Q53R41 847 aaKnown RBP9.95□□□□□ -0.82
VCAN-210ENST00000513960 PDPK2PQ6A1A2 396 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 GRAMD4Q6IC98 578 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 KCNN1Q92952 543 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 ATP2A3Q93084 1043 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 ANKRD36BP1Q96IX9 119 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 PCYT2Q99447 389 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 ZNF518BQ9C0D4 1074 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 C2orf40Q9H1Z8 148 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 PLA2G4CQ9UP65 541 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 COL11A1P12107 1806 aaPredicted RBP9.95□□□□□ -0.82
VCAN-210ENST00000513960 HSPA4LO95757 839 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 ZBED1O96006 694 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 IMPDH2P12268 514 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 CDH6P55285 790 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 FLOT2Q14254 428 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 NOL9Q5SY16 702 aaKnown RBP9.95□□□□□ -0.82
VCAN-210ENST00000513960 TREML2Q5T2D2 321 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 WDR78Q5VTH9 848 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 RIOX2Q8IUF8 465 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 DCUN1D1Q96GG9 259 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 NLRP4Q96MN2 994 aa9.95□□□□□ -0.82
VCAN-210ENST00000513960 HBS1LQ9Y450 684 aaKnown RBP9.95□□□□□ -0.82
VCAN-210ENST00000513960 HEMK1Q9Y5R4 338 aaPredicted RBP9.95□□□□□ -0.82
VCAN-210ENST00000513960 AP4B1Q9Y6B7 739 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms