RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 MAPRE1Q15691 268 aaKnown RBP12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 DGKDQ16760 1214 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 C2CD6Q53TS8 623 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 CAVIN4Q5BKX8 364 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 GALNT13Q8IUC8 556 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 PHTF2Q8N3S3 785 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 NEDD1Q8NHV4 660 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 PDCD6IPQ8WUM4 868 aaKnown RBP12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 FIG4Q92562 907 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 FBXL18Q96ME1 805 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 SLC29A1Q99808 456 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 CIB1Q99828 191 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 RTFDC1Q9BY42 306 aaPredicted RBP12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 ITGA11Q9UKX5 1188 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 ESYT2A0FGR8 921 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 POTEB3A0JP26 581 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 FAM155BO75949 473 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 GCNT3O95395 438 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 SGPL1O95470 568 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 KRT3P12035 628 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 CD58P19256 250 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 SERPINB1P30740 379 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 ETV3P41162 512 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 FMO5P49326 533 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 THOP1P52888 689 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 RPS6P62753 249 aaKnown RBP12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 BFSP2Q13515 415 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 STK11Q15831 433 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 POTEBQ6S5H4 581 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 FAM156AQ8NDB6 213 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 FBXO36Q8NEA4 188 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 HM13Q8TCT9 377 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 ZC3H15Q8WU90 426 aaKnown RBP12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 DCAKDQ8WVC6 231 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 NPLQ9BXD5 320 aaPredicted RBP12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 C6orf50Q9HD87 102 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 APEX2Q9UBZ4 518 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 SLC30A1Q9Y6M5 507 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 F5H6K3 240 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 JRKO75564 520 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 CES1P23141 567 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 KLRC2P26717 231 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 SSTR3P32745 418 aaPredicted RBP12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 GNG2P59768 71 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 TXNL4AP83876 142 aaKnown RBP12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 MS4A2Q01362 244 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 CENPCQ03188 943 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 KLHL38Q2WGJ6 581 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 PDPK2PQ6A1A2 396 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 NEK5Q6P3R8 708 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 KCNT2Q6UVM3 1135 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 SLC4A11Q8NBS3 891 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 GIPC2Q8TF65 315 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 MZB1Q8WU39 189 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 BRIP1Q9BX63 1249 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 ANO3Q9BYT9 981 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 FOXP3Q9BZS1 431 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 FANCEQ9HB96 536 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 CNTN3Q9P232 1028 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 ZMAT5Q9UDW3 170 aaKnown RBP12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 DNPEPQ9ULA0 475 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 B3GNT3Q9Y2A9 372 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 PCM1Q15154 2024 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 UBAP1LF5GYI3 381 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 PI4K2BG5E9Z4 385 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 EML1O00423 815 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 ASNA1O43681 348 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 SNAP91O60641 907 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 GAS7O60861 476 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 CLPXO76031 633 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 CDH1P12830 882 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 BCAMP50895 628 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 ECT2LQ008S8 904 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 OCA2Q04671 838 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 IKBKEQ14164 716 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 SLC35G1Q2M3R5 365 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 SLC30A10Q6XR72 485 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 CARM1Q86X55 608 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 ATP6V1E2Q96A05 226 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 STK39Q9UEW8 545 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 TRPC5Q9UL62 973 aaPredicted RBP12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 SNX13Q9Y5W8 968 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 TRIM49D1C9J1S8 452 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 CLDN25C9JDP6 229 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 ZNF701M0R085 212 aaPredicted RBP12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 ALOX5P09917 674 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 ATF7P17544 494 aaPredicted RBP12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 NMT1P30419 496 aaKnown RBP12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 ANO4Q32M45 955 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 MSS51Q4VC12 460 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 SNAP47Q5SQN1 464 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 RSBN1Q5VWQ0 802 aaPredicted RBP12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 PIWIL3Q7Z3Z3 882 aaKnown RBP12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 SLC22A16Q86VW1 577 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 CABLES1Q8TDN4 633 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 PPWD1Q96BP3 646 aaKnown RBP12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 OMA1Q96E52 524 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 MTMR9Q96QG7 549 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 TDRD1Q9BXT4 1180 aaKnown RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms