RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 TWSG1Q9GZX9 223 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 TFCP2L1Q9NZI6 479 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 PGAP2Q9UHJ9 254 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 FEM1BQ9UK73 627 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 PACSIN3Q9UKS6 424 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 PCDHB2Q9Y5E7 798 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 LRRFIP2Q9Y608 721 aaKnown RBP4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 HS3ST3A1Q9Y663 406 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 FER1L4A9Z1Z3 1794 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 CCDC187A0A096LP49 1063 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 LOC105369274A0A096LPK9 316 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 LOC102723532A0A0G2JNH3 316 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 RRN3P2A6NIE6 340 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 M0QZQ0 153 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 FZD7O75084 574 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 RHOBTB3O94955 611 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 GCP02774 474 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 TK1P04183 234 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 PYGLP06737 847 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 DRD4P21917 467 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 ITPKBP27987 946 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 CXCR5P32302 372 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 IGHMBP2P38935 993 aaKnown RBP4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 COPB1P53618 953 aaKnown RBP4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 RBM6P78332 1123 aaKnown RBP4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 SIM1P81133 766 aaPredicted RBP4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 EFR3AQ14156 821 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 FAM187BQ17R55 369 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 ERCC6LQ2NKX8 1250 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 RNASE12Q5GAN4 147 aaKnown RBP4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 TMEM63BQ5T3F8 832 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 ANKRD40Q6AI12 368 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 KIRREL2Q6UWL6 708 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 NAPRTQ6XQN6 538 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 DBX2Q6ZNG2 339 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 MMS22LQ6ZRQ5 1243 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 SLC29A4Q7RTT9 530 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 RASAL3Q86YV0 1011 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 OR4N4Q8N0Y3 316 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 OR52L2PQ8NGH6 319 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 TBC1D5Q92609 795 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 NPIPB3Q92617 1050 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 NAP1L4Q99733 375 aaKnown RBP4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 KRTAP4-2Q9BYR5 136 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 CIPCQ9C0C6 399 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 KCNK9Q9NPC2 374 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 RIC8AQ9NPQ8 531 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 G6PC2Q9NQR9 355 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 VPS4AQ9UN37 437 aa4.61□□□□□ -1.67
HMGB1P28-201ENST00000507778 SLC38A8A6NNN8 435 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 M0QYT0 321 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 FOXN1O15353 648 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 NCAM2O15394 837 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 NKX2-8O15522 239 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 EXOC3O60645 756 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 PRAMEF2O60811 474 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 C1RP00736 705 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 TFRCP02786 760 aaKnown RBP4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 C6P13671 934 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 KRT4P19013 534 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 RXRAP19793 462 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 MATN1P21941 496 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 GALNSP34059 522 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 MCM2P49736 904 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 JAK3P52333 1124 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 RBM5P52756 815 aaKnown RBP eCLIP4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 RPL15P61313 204 aaKnown RBP4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 GPC5P78333 572 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 CFHR3Q02985 330 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 SMAD1Q15797 465 aaKnown RBP4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 FAM110CQ1W6H9 321 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 GALNTL6Q49A17 601 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 TSTD2Q5T7W7 516 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 CCDC70Q6NSX1 233 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 CEP85Q6P2H3 762 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 LVRNQ6Q4G3 990 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 C16orf89Q6UX73 402 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 SYT13Q7L8C5 426 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 ANKS1BQ7Z6G8 1248 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 TMEM57Q8N5G2 664 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 TERB1Q8NA31 727 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 CAGE1Q8TC20 777 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 GLMPQ8WWB7 406 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 EDC3Q96F86 508 aaKnown RBP4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 COG8Q96MW5 612 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 SNX18Q96RF0 628 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 CHODLQ9H9P2 273 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 KCND3Q9UK17 655 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 BAG5Q9UL15 447 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 FZD4Q9ULV1 537 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 SLC12A4Q9UP95 1085 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 ENTPD2Q9Y5L3 495 aa4.6□□□□□ -1.67
HMGB1P28-201ENST00000507778 TBC1D3DA0A087WVF3 549 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 TBC1D3IA0A087WXS9 549 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 TBC1D3EA0A087X179 549 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 TBC1D3KA0A087X1G2 549 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 TBC1D3BA6NDS4 549 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 TBC1D3FA6NER0 549 aaPredicted RBP4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 TBC1D3LB9A6J9 549 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 SH3BP5O60239 455 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms