RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 HEMK1Q9Y5R4 338 aaPredicted RBP4.59□□□□□ -1.67
SMC4-227ENST00000497984 A6NNZ2 444 aa4.58□□□□□ -1.68
SMC4-227ENST00000497984 SPTLC2O15270 562 aa4.58□□□□□ -1.68
SMC4-227ENST00000497984 PRPF3O43395 683 aaKnown RBP4.58□□□□□ -1.68
SMC4-227ENST00000497984 INMTO95050 263 aa4.58□□□□□ -1.68
SMC4-227ENST00000497984 TBXAS1P24557 533 aaPredicted RBP4.58□□□□□ -1.68
SMC4-227ENST00000497984 SOX2P48431 317 aa4.58□□□□□ -1.68
SMC4-227ENST00000497984 P2RX3P56373 397 aa4.58□□□□□ -1.68
SMC4-227ENST00000497984 ANAPC15P60006 121 aa4.58□□□□□ -1.68
SMC4-227ENST00000497984 PPATQ06203 517 aa4.58□□□□□ -1.68
SMC4-227ENST00000497984 ACOX1Q15067 660 aa4.58□□□□□ -1.68
SMC4-227ENST00000497984 TTLL5Q6EMB2 1281 aa4.58□□□□□ -1.68
SMC4-227ENST00000497984 SUN3Q8TAQ9 357 aa4.58□□□□□ -1.68
SMC4-227ENST00000497984 FAM227BQ96M60 508 aa4.58□□□□□ -1.68
SMC4-227ENST00000497984 ZIM2Q9NZV7 527 aa4.58□□□□□ -1.68
SMC4-227ENST00000497984 ITGB1BP2Q9UKP3 347 aa4.58□□□□□ -1.68
SMC4-227ENST00000497984 hCG_2014768A0A024R1R8 64 aa4.57□□□□□ -1.68
SMC4-227ENST00000497984 PRYO14603 147 aa4.57□□□□□ -1.68
SMC4-227ENST00000497984 PDGFRBP09619 1106 aa4.57□□□□□ -1.68
SMC4-227ENST00000497984 TFEBP19484 476 aa4.57□□□□□ -1.68
SMC4-227ENST00000497984 CARSP49589 748 aaKnown RBP4.57□□□□□ -1.68
SMC4-227ENST00000497984 GAB1Q13480 694 aa4.57□□□□□ -1.68
SMC4-227ENST00000497984 CNGA3Q16281 694 aa4.57□□□□□ -1.68
SMC4-227ENST00000497984 ZNF628Q5EBL2 1059 aa4.57□□□□□ -1.68
SMC4-227ENST00000497984 NUGGCQ68CJ6 796 aa4.57□□□□□ -1.68
SMC4-227ENST00000497984 USP43Q70EL4 1123 aa4.57□□□□□ -1.68
SMC4-227ENST00000497984 RFX6Q8HWS3 928 aa4.57□□□□□ -1.68
SMC4-227ENST00000497984 FSTL5Q8N475 847 aaPredicted RBP4.57□□□□□ -1.68
SMC4-227ENST00000497984 TMEM199Q8N511 208 aa4.57□□□□□ -1.68
SMC4-227ENST00000497984 MIB2Q96AX9 1013 aa4.57□□□□□ -1.68
SMC4-227ENST00000497984 FAM84BQ96KN1 310 aaPredicted RBP4.57□□□□□ -1.68
SMC4-227ENST00000497984 RNF26Q9BY78 433 aaPredicted RBP4.57□□□□□ -1.68
SMC4-227ENST00000497984 ARHGAP39Q9C0H5 1083 aa4.57□□□□□ -1.68
SMC4-227ENST00000497984 MYLK2Q9H1R3 596 aa4.57□□□□□ -1.68
SMC4-227ENST00000497984 AS3MTQ9HBK9 375 aa4.57□□□□□ -1.68
SMC4-227ENST00000497984 THSD1Q9NS62 852 aa4.57□□□□□ -1.68
SMC4-227ENST00000497984 SELENONQ9NZV5 590 aa4.57□□□□□ -1.68
SMC4-227ENST00000497984 UGDHO60701 494 aa4.56□□□□□ -1.68
SMC4-227ENST00000497984 MYF5P13349 255 aa4.56□□□□□ -1.68
SMC4-227ENST00000497984 HOXD12P35452 270 aa4.56□□□□□ -1.68
SMC4-227ENST00000497984 PBX1P40424 430 aa4.56□□□□□ -1.68
SMC4-227ENST00000497984 VPS41P49754 854 aa4.56□□□□□ -1.68
SMC4-227ENST00000497984 KCNJ12Q14500 433 aa4.56□□□□□ -1.68
SMC4-227ENST00000497984 PTGR1Q14914 329 aa4.56□□□□□ -1.68
SMC4-227ENST00000497984 ASIC2Q16515 512 aa4.56□□□□□ -1.68
SMC4-227ENST00000497984 ZNF324BQ6AW86 544 aaPredicted RBP4.56□□□□□ -1.68
SMC4-227ENST00000497984 CELF1Q92879 486 aaKnown RBP4.56□□□□□ -1.68
SMC4-227ENST00000497984 APIPQ96GX9 242 aa4.56□□□□□ -1.68
SMC4-227ENST00000497984 MSLNLQ96KJ4 702 aa4.56□□□□□ -1.68
SMC4-227ENST00000497984 MEIS3Q99687 375 aa4.56□□□□□ -1.68
SMC4-227ENST00000497984 PIMREGQ9BSJ6 248 aa4.56□□□□□ -1.68
SMC4-227ENST00000497984 ASNSD1Q9NWL6 643 aa4.56□□□□□ -1.68
SMC4-227ENST00000497984 OGDHLQ9ULD0 1010 aa4.56□□□□□ -1.68
SMC4-227ENST00000497984 VPS4AQ9UN37 437 aa4.56□□□□□ -1.68
SMC4-227ENST00000497984 CBFA2T3O75081 653 aa4.55□□□□□ -1.68
SMC4-227ENST00000497984 ZC3H11AO75152 810 aaKnown RBP eCLIP4.55□□□□□ -1.684e-12■■■■■ 110
SMC4-227ENST00000497984 NDUFS1P28331 727 aa4.55□□□□□ -1.68
SMC4-227ENST00000497984 DUSP1P28562 367 aa4.55□□□□□ -1.68
SMC4-227ENST00000497984 CDC25AP30304 524 aa4.55□□□□□ -1.68
SMC4-227ENST00000497984 DGKQP52824 942 aa4.55□□□□□ -1.68
SMC4-227ENST00000497984 POLD3Q15054 466 aaPredicted RBP4.55□□□□□ -1.68
SMC4-227ENST00000497984 CXorf57Q6NSI4 855 aaKnown RBP4.55□□□□□ -1.68
SMC4-227ENST00000497984 UEVLDQ8IX04 471 aa4.55□□□□□ -1.68
SMC4-227ENST00000497984 ADGRF4Q8IZF3 695 aa4.55□□□□□ -1.68
SMC4-227ENST00000497984 LRTOMTQ8WZ04 291 aa4.55□□□□□ -1.68
SMC4-227ENST00000497984 GJA10Q969M2 543 aa4.55□□□□□ -1.68
SMC4-227ENST00000497984 SENP7Q9BQF6 1050 aa4.55□□□□□ -1.68
SMC4-227ENST00000497984 LRRC27Q9C0I9 530 aa4.55□□□□□ -1.68
SMC4-227ENST00000497984 C1orf112Q9NSG2 853 aa4.55□□□□□ -1.68
SMC4-227ENST00000497984 PCDHA7Q9UN72 937 aa4.55□□□□□ -1.68
SMC4-227ENST00000497984 PCDHB2Q9Y5E7 798 aa4.55□□□□□ -1.68
SMC4-227ENST00000497984 KIR2DS5A0A0G2JLQ3 304 aa4.54□□□□□ -1.68
SMC4-227ENST00000497984 KIR2DS3K7RE56 304 aa4.54□□□□□ -1.68
SMC4-227ENST00000497984 PRPF4O43172 522 aaKnown RBP eCLIP4.54□□□□□ -1.68
SMC4-227ENST00000497984 MT-ND5P03915 603 aa4.54□□□□□ -1.68
SMC4-227ENST00000497984 YY1P25490 414 aa4.54□□□□□ -1.68
SMC4-227ENST00000497984 ZNF84P51523 738 aa4.54□□□□□ -1.68
SMC4-227ENST00000497984 CACNB3P54284 484 aa4.54□□□□□ -1.68
SMC4-227ENST00000497984 EPHB1P54762 984 aa4.54□□□□□ -1.68
SMC4-227ENST00000497984 IGBP1P78318 339 aa4.54□□□□□ -1.68
SMC4-227ENST00000497984 SMTNL2Q2TAL5 461 aa4.54□□□□□ -1.68
SMC4-227ENST00000497984 ASPHD1Q5U4P2 390 aa4.54□□□□□ -1.68
SMC4-227ENST00000497984 RNF220Q5VTB9 566 aa4.54□□□□□ -1.68
SMC4-227ENST00000497984 FBXL14Q8N1E6 418 aa4.54□□□□□ -1.68
SMC4-227ENST00000497984 ZBTB8BQ8NAP8 495 aaPredicted RBP4.54□□□□□ -1.68
SMC4-227ENST00000497984 IPCEF1Q8WWN9 437 aaPredicted RBP4.54□□□□□ -1.68
SMC4-227ENST00000497984 AKAP1Q92667 903 aaKnown RBP eCLIP4.54□□□□□ -1.684e-24■■■■■ 140.6
SMC4-227ENST00000497984 WDR24Q96S15 920 aa4.54□□□□□ -1.68
SMC4-227ENST00000497984 SLC25A32Q9H2D1 315 aa4.54□□□□□ -1.68
SMC4-227ENST00000497984 ZNF287Q9HBT7 754 aa4.54□□□□□ -1.68
SMC4-227ENST00000497984 MDFICQ9P1T7 246 aa4.54□□□□□ -1.68
SMC4-227ENST00000497984 SPATA31A5Q5VU36 1347 aa4.53□□□□□ -1.68
SMC4-227ENST00000497984 SPATA31A7Q8IWB4 1347 aa4.53□□□□□ -1.68
SMC4-227ENST00000497984 ZNF335Q9H4Z2 1342 aaPredicted RBP4.53□□□□□ -1.68
SMC4-227ENST00000497984 MAP4K4O95819 1239 aaPredicted RBP4.53□□□□□ -1.68
SMC4-227ENST00000497984 HOXA11P31270 313 aaPredicted RBP4.53□□□□□ -1.68
SMC4-227ENST00000497984 PGM5Q15124 567 aa4.53□□□□□ -1.68
SMC4-227ENST00000497984 DLGAP5Q15398 846 aa4.53□□□□□ -1.68
SMC4-227ENST00000497984 PIK3CD-AS1Q5SR53 167 aa4.53□□□□□ -1.68
SMC4-227ENST00000497984 IQCF1Q8N6M8 205 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms