RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 CDK17Q00537 523 aa17.06■□□□□ 0.32
SF3A1-209ENST00000496189 RING1Q06587 406 aa17.06■□□□□ 0.32
SF3A1-209ENST00000496189 E2F5Q15329 346 aa17.06■□□□□ 0.32
SF3A1-209ENST00000496189 TRIM72Q6ZMU5 477 aa17.06■□□□□ 0.32
SF3A1-209ENST00000496189 NOP9Q86U38 636 aaKnown RBP17.06■□□□□ 0.32
SF3A1-209ENST00000496189 CPXM2Q8N436 756 aa17.06■□□□□ 0.32
SF3A1-209ENST00000496189 RPLP0P6Q8NHW5 317 aa17.06■□□□□ 0.32
SF3A1-209ENST00000496189 DDI1Q8WTU0 396 aa17.06■□□□□ 0.32
SF3A1-209ENST00000496189 C18orf8Q96DM3 657 aa17.06■□□□□ 0.32
SF3A1-209ENST00000496189 SEMA4AQ9H3S1 761 aa17.06■□□□□ 0.32
SF3A1-209ENST00000496189 SLC12A6Q9UHW9 1150 aa17.06■□□□□ 0.32
SF3A1-209ENST00000496189 TLR6Q9Y2C9 796 aa17.06■□□□□ 0.32
SF3A1-209ENST00000496189 PCDHGA2Q9Y5H1 932 aa17.06■□□□□ 0.32
SF3A1-209ENST00000496189 A0A1W2PQJ5 194 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 CHURC1-FNTBB4DL54 471 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 CACNG3O60359 315 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 TULP3O75386 442 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 SLC2A3P11169 496 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 CDH5P33151 784 aaPredicted RBP17.05■□□□□ 0.32
SF3A1-209ENST00000496189 PBX1P40424 430 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 TNFRSF4P43489 277 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 SLC6A11P48066 632 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 DGKGP49619 791 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 SEC13P55735 322 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 CDR2Q01850 454 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 SLC6A3Q01959 620 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 ARID5AQ03989 594 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 MPPE1Q53F39 396 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 DCAF6Q58WW2 860 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 FAM183BPQ6ZVS7 135 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 TRMT11Q7Z4G4 463 aaKnown RBP17.05■□□□□ 0.32
SF3A1-209ENST00000496189 CCDC117Q8IWD4 279 aaPredicted RBP17.05■□□□□ 0.32
SF3A1-209ENST00000496189 WDTC1Q8N5D0 677 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 DQX1Q8TE96 717 aaKnown RBP17.05■□□□□ 0.32
SF3A1-209ENST00000496189 BHMTQ93088 406 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 RNF34Q969K3 372 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 RBSNQ9H1K0 784 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 FAM204AQ9H8W3 233 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 FBRSL1Q9HCM7 1045 aaKnown RBP17.05■□□□□ 0.32
SF3A1-209ENST00000496189 SEPT11Q9NVA2 429 aaKnown RBP17.05■□□□□ 0.32
SF3A1-209ENST00000496189 ZSCAN32Q9NX65 697 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 RRN3Q9NYV6 651 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 NAALADL1Q9UQQ1 740 aa17.05■□□□□ 0.32
SF3A1-209ENST00000496189 ITIH6Q6UXX5 1313 aa17.04■□□□□ 0.32
SF3A1-209ENST00000496189 IRAK2O43187 625 aa17.04■□□□□ 0.32
SF3A1-209ENST00000496189 PAPSS2O95340 614 aaPredicted RBP17.04■□□□□ 0.32
SF3A1-209ENST00000496189 KLKB1P03952 638 aa17.04■□□□□ 0.32
SF3A1-209ENST00000496189 MMEP08473 750 aa17.04■□□□□ 0.32
SF3A1-209ENST00000496189 TPM1P09493 284 aa17.04■□□□□ 0.32
SF3A1-209ENST00000496189 NBL1P41271 181 aa17.04■□□□□ 0.32
SF3A1-209ENST00000496189 MRPS21P82921 87 aaKnown RBP17.04■□□□□ 0.32
SF3A1-209ENST00000496189 SATB1Q01826 763 aa17.04■□□□□ 0.32
SF3A1-209ENST00000496189 MTA1Q13330 715 aa17.04■□□□□ 0.32
SF3A1-209ENST00000496189 HSF5Q4G112 596 aaPredicted RBP17.04■□□□□ 0.32
SF3A1-209ENST00000496189 PTPN20Q4JDL3 420 aa17.04■□□□□ 0.32
SF3A1-209ENST00000496189 C2orf27AQ580R0 203 aa17.04■□□□□ 0.32
SF3A1-209ENST00000496189 C10orf76Q5T2E6 689 aa17.04■□□□□ 0.32
SF3A1-209ENST00000496189 ADGRF1Q5T601 910 aa17.04■□□□□ 0.32
SF3A1-209ENST00000496189 SFMBT2Q5VUG0 894 aa17.04■□□□□ 0.32
SF3A1-209ENST00000496189 NAIF1Q69YI7 327 aaPredicted RBP17.04■□□□□ 0.32
SF3A1-209ENST00000496189 SARM1Q6SZW1 724 aa17.04■□□□□ 0.32
SF3A1-209ENST00000496189 ETFBKMTQ8IXQ9 262 aa17.04■□□□□ 0.32
SF3A1-209ENST00000496189 TERB1Q8NA31 727 aa17.04■□□□□ 0.32
SF3A1-209ENST00000496189 NKD2Q969F2 451 aaPredicted RBP17.04■□□□□ 0.32
SF3A1-209ENST00000496189 IRX2Q9BZI1 471 aaPredicted RBP17.04■□□□□ 0.32
SF3A1-209ENST00000496189 TRIM5Q9C035 493 aa17.04■□□□□ 0.32
SF3A1-209ENST00000496189 TMEM51Q9NW97 253 aa17.04■□□□□ 0.32
SF3A1-209ENST00000496189 STAP1Q9ULZ2 295 aa17.04■□□□□ 0.32
SF3A1-209ENST00000496189 TRUB2O95900 331 aaKnown RBP17.03■□□□□ 0.32
SF3A1-209ENST00000496189 ERBB2P04626 1255 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 SCNN1AP37088 669 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 NSFP46459 744 aaKnown RBP17.03■□□□□ 0.32
SF3A1-209ENST00000496189 TRIM14Q14142 442 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 GAS6Q14393 721 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 ASIC2Q16515 512 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 GAB4Q2WGN9 574 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 FAM102AQ5T9C2 384 aaPredicted RBP17.03■□□□□ 0.32
SF3A1-209ENST00000496189 NAA35Q5VZE5 725 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 SPECC1LQ69YQ0 1117 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 SDE2Q6IQ49 451 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 TSSK4Q6SA08 328 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 OLFML1Q6UWY5 402 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 SND1Q7KZF4 910 aaKnown RBP eCLIP17.03■□□□□ 0.32
SF3A1-209ENST00000496189 SLC26A9Q7LBE3 791 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 C12orf40Q86WS4 652 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 MAML2Q8IZL2 1156 aaPredicted RBP17.03■□□□□ 0.32
SF3A1-209ENST00000496189 ATP6V0D2Q8N8Y2 350 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 ZNF557Q8N988 423 aaPredicted RBP17.03■□□□□ 0.32
SF3A1-209ENST00000496189 KCNV2Q8TDN2 545 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 DDX1Q92499 740 aaKnown RBP17.03■□□□□ 0.32
SF3A1-209ENST00000496189 BAP1Q92560 729 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 AZIN2Q96A70 460 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 TMA16Q96EY4 203 aaKnown RBP17.03■□□□□ 0.32
SF3A1-209ENST00000496189 PLK2Q9NYY3 685 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 TJP2Q9UDY2 1190 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 NOCTQ9UK39 431 aaKnown RBP17.03■□□□□ 0.32
SF3A1-209ENST00000496189 LUC7L2Q9Y383 392 aaKnown RBP17.03■□□□□ 0.32
SF3A1-209ENST00000496189 PAXBP1Q9Y5B6 917 aa17.03■□□□□ 0.32
SF3A1-209ENST00000496189 LRRC53A6NM62 1247 aa17.02■□□□□ 0.32
SF3A1-209ENST00000496189 K7EQS6 105 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms