RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 SETD4Q9NVD3 440 aa7.27□□□□□ -1.25
VIM-207ENST00000495528 MAP3K20Q9NYL2 800 aaKnown RBP7.27□□□□□ -1.25
VIM-207ENST00000495528 MAD2L2Q9UI95 211 aa7.27□□□□□ -1.25
VIM-207ENST00000495528 LIMCH1Q9UPQ0 1083 aa7.27□□□□□ -1.25
VIM-207ENST00000495528 TCAF1Q9Y4C2 921 aa7.27□□□□□ -1.25
VIM-207ENST00000495528 PCDHA13Q9Y5I0 950 aa7.27□□□□□ -1.25
VIM-207ENST00000495528 COL4A4P53420 1690 aaPredicted RBP7.26□□□□□ -1.25
VIM-207ENST00000495528 MUC6Q6W4X9 2439 aa7.26□□□□□ -1.25
VIM-207ENST00000495528 CCDC154A6NI56 674 aa7.26□□□□□ -1.25
VIM-207ENST00000495528 CAPN14A8MX76 684 aa7.26□□□□□ -1.25
VIM-207ENST00000495528 GCOM1H8Y6P7 765 aaPredicted RBP7.26□□□□□ -1.25
VIM-207ENST00000495528 HOXA3O43365 443 aaPredicted RBP7.26□□□□□ -1.25
VIM-207ENST00000495528 DCXO43602 365 aa7.26□□□□□ -1.25
VIM-207ENST00000495528 LINC00271P0C7V0 271 aa7.26□□□□□ -1.25
VIM-207ENST00000495528 POLR2MP0CAP2 368 aa7.26□□□□□ -1.25
VIM-207ENST00000495528 CCND2P30279 289 aa7.26□□□□□ -1.25
VIM-207ENST00000495528 CRHR1P34998 444 aa7.26□□□□□ -1.25
VIM-207ENST00000495528 SREBF1P36956 1147 aa7.26□□□□□ -1.25
VIM-207ENST00000495528 ADAM17P78536 824 aa7.26□□□□□ -1.25
VIM-207ENST00000495528 MGAT2Q10469 447 aa7.26□□□□□ -1.25
VIM-207ENST00000495528 MRPL49Q13405 166 aaKnown RBP7.26□□□□□ -1.25
VIM-207ENST00000495528 IMMTQ16891 758 aaKnown RBP7.26□□□□□ -1.25
VIM-207ENST00000495528 IFIT1BQ5T764 474 aaKnown RBP7.26□□□□□ -1.25
VIM-207ENST00000495528 CYB5R4Q7L1T6 521 aa7.26□□□□□ -1.25
VIM-207ENST00000495528 PALM2Q8IXS6 379 aa7.26□□□□□ -1.25
VIM-207ENST00000495528 CMTR2Q8IYT2 770 aaKnown RBP7.26□□□□□ -1.25
VIM-207ENST00000495528 MIER2Q8N344 545 aa7.26□□□□□ -1.25
VIM-207ENST00000495528 SAMD3Q8N6K7 520 aa7.26□□□□□ -1.25
VIM-207ENST00000495528 HOXB13Q92826 284 aaPredicted RBP7.26□□□□□ -1.25
VIM-207ENST00000495528 PIGSQ96S52 555 aa7.26□□□□□ -1.25
VIM-207ENST00000495528 UBAC1Q9BSL1 405 aa7.26□□□□□ -1.25
VIM-207ENST00000495528 IFIH1Q9BYX4 1025 aaKnown RBP7.26□□□□□ -1.25
VIM-207ENST00000495528 KRT23Q9C075 422 aa7.26□□□□□ -1.25
VIM-207ENST00000495528 BCO1Q9HAY6 547 aa7.26□□□□□ -1.25
VIM-207ENST00000495528 FAM171A2A8MVW0 826 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 GRM6O15303 877 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 HTRA2O43464 458 aaPredicted RBP7.25□□□□□ -1.25
VIM-207ENST00000495528 AKAP10O43572 662 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 CYTH3O43739 400 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 EIF5BO60841 1220 aaKnown RBP7.25□□□□□ -1.25
VIM-207ENST00000495528 CAND2O75155 1236 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 REC8O95072 547 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 GASTP01350 101 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 CHRNA1P02708 482 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 PF4V1P10720 104 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 ICAM3P32942 547 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 BMPR1AP36894 532 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 SLC6A9P48067 706 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 EPHB1P54762 984 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 HYAL1Q12794 435 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 PIN1Q13526 163 aaPredicted RBP7.25□□□□□ -1.25
VIM-207ENST00000495528 IL10RAQ13651 578 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 NEDD9Q14511 834 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 C3orf36Q3SXR2 165 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 METTL7BQ6UX53 244 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 Q6ZSN1 163 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 PDZD4Q76G19 769 aaPredicted RBP7.25□□□□□ -1.25
VIM-207ENST00000495528 RPAINQ86UA6 219 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 ADHFE1Q8IWW8 467 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 APBB2Q92870 758 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 MAP4K1Q92918 833 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 HSPBAP1Q96EW2 488 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 GPR20Q99678 358 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 CPPED1Q9BRF8 314 aaPredicted RBP7.25□□□□□ -1.25
VIM-207ENST00000495528 LSG1Q9H089 658 aaKnown RBP7.25□□□□□ -1.25
VIM-207ENST00000495528 RIOX1Q9H6W3 641 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 ZNF180Q9UJW8 692 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 SIK3Q9Y2K2 1263 aa7.25□□□□□ -1.25
VIM-207ENST00000495528 C5orf67F2Z3F1 127 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 LINC01565O15544 149 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 MBTPS2O43462 519 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 NCK2O43639 380 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 ENDOD1O94919 500 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 CSPG5O95196 566 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 RB1P06400 928 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 GHRP10912 638 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 ZSCAN20P17040 1043 aaPredicted RBP7.24□□□□□ -1.25
VIM-207ENST00000495528 HK1P19367 917 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 CTNNB1P35222 781 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 ADKP55263 362 aaKnown RBP7.24□□□□□ -1.25
VIM-207ENST00000495528 SP4Q02446 784 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 NHLH1Q02575 133 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 CAMK1Q14012 370 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 GRM4Q14833 912 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 UTP14CQ5TAP6 766 aaKnown RBP7.24□□□□□ -1.25
VIM-207ENST00000495528 ANKS6Q68DC2 871 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 KAT5Q92993 513 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 HDAC10Q969S8 669 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 PGBD4Q96DM1 585 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 INPP4AQ96PE3 977 aaPredicted RBP7.24□□□□□ -1.25
VIM-207ENST00000495528 KRTAP4-9Q9BYQ8 210 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 KLC2Q9H0B6 622 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 CSRNP2Q9H175 543 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 UPF2Q9HAU5 1272 aaKnown RBP7.24□□□□□ -1.25
VIM-207ENST00000495528 LANCL2Q9NS86 450 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 ZIM2Q9NZV7 527 aa7.24□□□□□ -1.25
VIM-207ENST00000495528 HECAQ9UBI9 543 aaPredicted RBP7.24□□□□□ -1.25
VIM-207ENST00000495528 AJAP1Q9UKB5 411 aaPredicted RBP7.24□□□□□ -1.25
VIM-207ENST00000495528 CNOT11Q9UKZ1 510 aaKnown RBP7.24□□□□□ -1.25
VIM-207ENST00000495528 FAM50BQ9Y247 325 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms