RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CES4AQ5XG92 561 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 C16orf46Q6P387 395 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 SHCBP1Q8NEM2 672 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 ZNF483Q8TF39 744 aaPredicted RBP17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 SLC35F5Q8WV83 523 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 BRI3BPQ8WY22 251 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 STMN2Q93045 179 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 PCMTD2Q9NV79 361 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 ETNK2Q9NVF9 386 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 AP1G2O75843 785 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 YWHAZP63104 245 aaKnown RBP17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 TMPRSS15P98073 1019 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 UBAP2LQ14157 1087 aaKnown RBP17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 TFDP2Q14188 446 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 EML3Q32P44 896 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 PKDCCQ504Y2 493 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 TREML1Q86YW5 311 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 MPP5Q8N3R9 675 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 CCDC185Q8N715 623 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 AGR3Q8TD06 166 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 DNAJB3Q8WWF6 145 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 MAML3Q96JK9 1138 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 SNX27Q96L92 541 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 THTPAQ9BU02 230 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 ADAMTS10Q9H324 1103 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 TEX264Q9Y6I9 313 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 CYP2F1P24903 491 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 PITX1P78337 314 aaPredicted RBP17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 ACAP1Q15027 740 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 KLHL38Q2WGJ6 581 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 LDLRAD1Q5T700 205 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 LMNTD2Q8IXW0 634 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 KBTBD2Q8IY47 623 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 BANPQ8N9N5 519 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 CCDC124Q96CT7 223 aaKnown RBP17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 KCNK13Q9HB14 408 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 BATF3Q9NR55 127 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 PIN4Q9Y237 131 aaKnown RBP17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 C2CD2LO14523 706 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 METTL18O95568 372 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 GNAT1P11488 350 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 PGM1P36871 562 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 CCDC15Q0P6D6 951 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 RASA2Q15283 850 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 PARP6Q2NL67 630 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 DPY19L2Q6NUT2 758 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 CCNJLQ8IV13 435 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 ZNF276Q8N554 614 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 CFAP61Q8NHU2 1237 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 MS4A4AQ96JQ5 239 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 BTBD10Q9BSF8 475 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 DHRS4Q9BTZ2 278 aa17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 ZNF638Q14966 1978 aaKnown RBP17.1■□□□□ 0.33
CCDC88B-210ENST00000494566 LYPLA1O75608 230 aaPredicted RBP17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 ACAT1P24752 427 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 STIP1P31948 543 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 SKIV2L2P42285 1042 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 SOX4Q06945 474 aaPredicted RBP17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 DGKDQ16760 1214 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 SLC27A1Q6PCB7 646 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 FAM131BQ86XD5 332 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 MAP7D3Q8IWC1 876 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 SLC2A14Q8TDB8 520 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 NSL1Q96IY1 281 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 PPP1R36Q96LQ0 422 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 EBF4Q9BQW3 602 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 SLC4A5Q9BY07 1137 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 FRMD8P1Q9BZ68 369 aaPredicted RBP17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 C20orf27Q9GZN8 174 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 SENP1Q9P0U3 644 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 CLDN5O00501 218 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 GPR32O75388 356 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 ZWINTO95229 277 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 CHI3L2Q15782 390 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 TSNAXIP1Q2TAA8 658 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 DUSP28Q4G0W2 176 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 FAM47CQ5HY64 1035 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 C9orf57Q5W0N0 161 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 TRMT10BQ6PF06 316 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 USP50Q70EL3 339 aaPredicted RBP17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 RSPH3Q86UC2 560 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 CAND1Q86VP6 1230 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 HACE1Q8IYU2 909 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 ATXN7L3BQ96GX2 97 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 PLAC1Q9HBJ0 212 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 CYLDQ9NQC7 956 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 SMYD2Q9NRG4 433 aa17.09■□□□□ 0.33
CCDC88B-210ENST00000494566 COPEO14579 308 aa17.08■□□□□ 0.33
CCDC88B-210ENST00000494566 SLC45A4Q5BKX6 768 aa17.08■□□□□ 0.33
CCDC88B-210ENST00000494566 KBTBD7Q8WVZ9 684 aa17.08■□□□□ 0.33
CCDC88B-210ENST00000494566 MOCOSQ96EN8 888 aa17.08■□□□□ 0.33
CCDC88B-210ENST00000494566 SRPK1Q96SB4 655 aaKnown RBP17.08■□□□□ 0.33
CCDC88B-210ENST00000494566 TINF2Q9BSI4 451 aa17.08■□□□□ 0.33
CCDC88B-210ENST00000494566 NRDE2Q9H7Z3 1164 aa17.08■□□□□ 0.33
CCDC88B-210ENST00000494566 CYP4F11Q9HBI6 524 aa17.08■□□□□ 0.33
CCDC88B-210ENST00000494566 BPTFQ12830 3046 aa17.08■□□□□ 0.33
CCDC88B-210ENST00000494566 ZMPSTE24O75844 475 aa17.08■□□□□ 0.32
CCDC88B-210ENST00000494566 SMIM10L2AP0DMW4 78 aa17.08■□□□□ 0.32
CCDC88B-210ENST00000494566 SMIM10L2BP0DMW5 78 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms