RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 KNTC1P50748 2209 aa16.14■□□□□ 0.17
MCF2L-228ENST00000487354 TENM4Q6N022 2769 aa16.14■□□□□ 0.17
MCF2L-228ENST00000487354 NPC1O15118 1278 aa16.14■□□□□ 0.17
MCF2L-228ENST00000487354 PHACTR2O75167 634 aa16.14■□□□□ 0.17
MCF2L-228ENST00000487354 FAM200BP0CF97 657 aa16.14■□□□□ 0.17
MCF2L-228ENST00000487354 OXTRP30559 389 aa16.14■□□□□ 0.17
MCF2L-228ENST00000487354 PLA2G4AP47712 749 aa16.14■□□□□ 0.17
MCF2L-228ENST00000487354 KIF11P52732 1056 aa16.14■□□□□ 0.17
MCF2L-228ENST00000487354 GOLGA8FQ08AF8 430 aa16.14■□□□□ 0.17
MCF2L-228ENST00000487354 GOLGA8DPQ0D2H9 430 aa16.14■□□□□ 0.17
MCF2L-228ENST00000487354 C10orf120Q5SQS8 335 aa16.14■□□□□ 0.17
MCF2L-228ENST00000487354 C1orf220Q5T0J3 134 aa16.14■□□□□ 0.17
MCF2L-228ENST00000487354 UNC13DQ70J99 1090 aa16.14■□□□□ 0.17
MCF2L-228ENST00000487354 SCUBE3Q8IX30 993 aa16.14■□□□□ 0.17
MCF2L-228ENST00000487354 ZNF276Q8N554 614 aa16.14■□□□□ 0.17
MCF2L-228ENST00000487354 RHBDD1Q8TEB9 315 aa16.14■□□□□ 0.17
MCF2L-228ENST00000487354 HNRNPABQ99729 332 aaKnown RBP16.14■□□□□ 0.17
MCF2L-228ENST00000487354 CDC6Q99741 560 aa16.14■□□□□ 0.17
MCF2L-228ENST00000487354 PNPLA8Q9NP80 782 aa16.14■□□□□ 0.17
MCF2L-228ENST00000487354 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.14■□□□□ 0.17
MCF2L-228ENST00000487354 PCDHA5Q9Y5H7 936 aa16.14■□□□□ 0.17
MCF2L-228ENST00000487354 GOLGA8CPA6NN73 597 aa16.13■□□□□ 0.17
MCF2L-228ENST00000487354 ASS1P00966 412 aaKnown RBP16.13■□□□□ 0.17
MCF2L-228ENST00000487354 PRB1P04280 392 aa16.13■□□□□ 0.17
MCF2L-228ENST00000487354 ACSL1P33121 698 aa16.13■□□□□ 0.17
MCF2L-228ENST00000487354 INCA1Q0VD86 236 aa16.13■□□□□ 0.17
MCF2L-228ENST00000487354 ZACNQ401N2 412 aa16.13■□□□□ 0.17
MCF2L-228ENST00000487354 ERICH6BQ5W0A0 696 aa16.13■□□□□ 0.17
MCF2L-228ENST00000487354 CCDC186Q7Z3E2 898 aa16.13■□□□□ 0.17
MCF2L-228ENST00000487354 ANKS1BQ7Z6G8 1248 aa16.13■□□□□ 0.17
MCF2L-228ENST00000487354 UNC93AQ86WB7 457 aa16.13■□□□□ 0.17
MCF2L-228ENST00000487354 FAM217AQ8IXS0 508 aa16.13■□□□□ 0.17
MCF2L-228ENST00000487354 LINC00301Q8NCQ3 95 aa16.13■□□□□ 0.17
MCF2L-228ENST00000487354 PRCCQ92733 491 aaPredicted RBP16.13■□□□□ 0.17
MCF2L-228ENST00000487354 DHX58Q96C10 678 aa16.13■□□□□ 0.17
MCF2L-228ENST00000487354 NUP58Q9BVL2 599 aa16.13■□□□□ 0.17
MCF2L-228ENST00000487354 CUEDC2Q9H467 287 aa16.13■□□□□ 0.17
MCF2L-228ENST00000487354 DMAC2Q9NW81 257 aa16.13■□□□□ 0.17
MCF2L-228ENST00000487354 ELOVL2Q9NXB9 296 aa16.13■□□□□ 0.17
MCF2L-228ENST00000487354 AGO1Q9UL18 857 aaKnown RBP16.13■□□□□ 0.17
MCF2L-228ENST00000487354 MTMR6Q9Y217 621 aa16.13■□□□□ 0.17
MCF2L-228ENST00000487354 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.13■□□□□ 0.17
MCF2L-228ENST00000487354 USP3Q9Y6I4 520 aa16.13■□□□□ 0.17
MCF2L-228ENST00000487354 EXOC3O60645 756 aa16.12■□□□□ 0.17
MCF2L-228ENST00000487354 HLA-EP13747 358 aa16.12■□□□□ 0.17
MCF2L-228ENST00000487354 CORO1AP31146 461 aaKnown RBP16.12■□□□□ 0.17
MCF2L-228ENST00000487354 AFF3P51826 1226 aaKnown RBP16.12■□□□□ 0.17
MCF2L-228ENST00000487354 AP3M2P53677 418 aa16.12■□□□□ 0.17
MCF2L-228ENST00000487354 CAMK2GQ13555 558 aaPredicted RBP16.12■□□□□ 0.17
MCF2L-228ENST00000487354 KNOP1Q1ED39 458 aaKnown RBP16.12■□□□□ 0.17
MCF2L-228ENST00000487354 SHC4Q6S5L8 630 aa16.12■□□□□ 0.17
MCF2L-228ENST00000487354 FAM124AQ86V42 546 aa16.12■□□□□ 0.17
MCF2L-228ENST00000487354 LRRC27Q9C0I9 530 aa16.12■□□□□ 0.17
MCF2L-228ENST00000487354 PCED1AQ9H1Q7 454 aa16.12■□□□□ 0.17
MCF2L-228ENST00000487354 BLZF1Q9H2G9 400 aa16.12■□□□□ 0.17
MCF2L-228ENST00000487354 APOBEC3GQ9HC16 384 aaKnown RBP16.12■□□□□ 0.17
MCF2L-228ENST00000487354 TM9SF3Q9HD45 589 aa16.12■□□□□ 0.17
MCF2L-228ENST00000487354 SLC39A2Q9NP94 309 aa16.12■□□□□ 0.17
MCF2L-228ENST00000487354 OSGEPQ9NPF4 335 aa16.12■□□□□ 0.17
MCF2L-228ENST00000487354 CGNQ9P2M7 1197 aaKnown RBP16.12■□□□□ 0.17
MCF2L-228ENST00000487354 TFIP11Q9UBB9 837 aaKnown RBP16.12■□□□□ 0.17
MCF2L-228ENST00000487354 NAGPAQ9UK23 515 aa16.12■□□□□ 0.17
MCF2L-228ENST00000487354 ATMQ13315 3056 aa16.11■□□□□ 0.17
MCF2L-228ENST00000487354 H0Y8X5 98 aa16.11■□□□□ 0.17
MCF2L-228ENST00000487354 KCNK3O14649 394 aa16.11■□□□□ 0.17
MCF2L-228ENST00000487354 TNFSF14O43557 240 aa16.11■□□□□ 0.17
MCF2L-228ENST00000487354 PCDHGA12O60330 932 aa16.11■□□□□ 0.17
MCF2L-228ENST00000487354 SYNCRIPO60506 623 aaKnown RBP16.11■□□□□ 0.17
MCF2L-228ENST00000487354 PDCP20941 246 aa16.11■□□□□ 0.17
MCF2L-228ENST00000487354 GRIA4P48058 902 aa16.11■□□□□ 0.17
MCF2L-228ENST00000487354 EIF4HQ15056 248 aaKnown RBP16.11■□□□□ 0.17
MCF2L-228ENST00000487354 ZC3H3Q8IXZ2 948 aaKnown RBP16.11■□□□□ 0.17
MCF2L-228ENST00000487354 GALNT15Q8N3T1 639 aa16.11■□□□□ 0.17
MCF2L-228ENST00000487354 CPXM2Q8N436 756 aa16.11■□□□□ 0.17
MCF2L-228ENST00000487354 TMEM174Q8WUU8 243 aa16.11■□□□□ 0.17
MCF2L-228ENST00000487354 COL26A1Q96A83 441 aa16.11■□□□□ 0.17
MCF2L-228ENST00000487354 TMEM245Q9H330 911 aa16.11■□□□□ 0.17
MCF2L-228ENST00000487354 CLIC5Q9NZA1 410 aa16.11■□□□□ 0.17
MCF2L-228ENST00000487354 ANKRD6Q9Y2G4 727 aa16.11■□□□□ 0.17
MCF2L-228ENST00000487354 MGAQ8IWI9 3026 aa16.11■□□□□ 0.17
MCF2L-228ENST00000487354 ARID1BQ8NFD5 2236 aaPredicted RBP16.1■□□□□ 0.17
MCF2L-228ENST00000487354 PAPSS1O43252 624 aaPredicted RBP16.1■□□□□ 0.17
MCF2L-228ENST00000487354 EPHX1P07099 455 aa16.1■□□□□ 0.17
MCF2L-228ENST00000487354 HMBSP08397 361 aa16.1■□□□□ 0.17
MCF2L-228ENST00000487354 HOXD9P28356 352 aaPredicted RBP16.1■□□□□ 0.17
MCF2L-228ENST00000487354 CTSKP43235 329 aa16.1■□□□□ 0.17
MCF2L-228ENST00000487354 CLDN6P56747 220 aa16.1■□□□□ 0.17
MCF2L-228ENST00000487354 SGSM1Q2NKQ1 1148 aa16.1■□□□□ 0.17
MCF2L-228ENST00000487354 DHRS13Q6UX07 377 aa16.1■□□□□ 0.17
MCF2L-228ENST00000487354 SV2AQ7L0J3 742 aa16.1■□□□□ 0.17
MCF2L-228ENST00000487354 PDCD7Q8N8D1 485 aaKnown RBP16.1■□□□□ 0.17
MCF2L-228ENST00000487354 KIAA0895Q8NCT3 520 aa16.1■□□□□ 0.17
MCF2L-228ENST00000487354 OR2T3Q8NH03 318 aa16.1■□□□□ 0.17
MCF2L-228ENST00000487354 UCMAQ8WVF2 138 aa16.1■□□□□ 0.17
MCF2L-228ENST00000487354 SNX19Q92543 992 aa16.1■□□□□ 0.17
MCF2L-228ENST00000487354 IGSF8Q969P0 613 aa16.1■□□□□ 0.17
MCF2L-228ENST00000487354 BIRC7Q96CA5 298 aa16.1■□□□□ 0.17
MCF2L-228ENST00000487354 CYFIP2Q96F07 1278 aa16.1■□□□□ 0.17
MCF2L-228ENST00000487354 BACH2Q9BYV9 841 aa16.1■□□□□ 0.17
MCF2L-228ENST00000487354 RASAL2Q9UJF2 1139 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms