RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.57□□□□□ -1.68
VPS41-213ENST00000485955 CCAR1Q8IX12 1150 aaKnown RBP4.57□□□□□ -1.68
VPS41-213ENST00000485955 TXLNBQ8N3L3 684 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 ARL8BQ9NVJ2 186 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 SIRT4Q9Y6E7 314 aaPredicted RBP4.57□□□□□ -1.68
VPS41-213ENST00000485955 CCDC187A0A096LP49 1063 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.56□□□□□ -1.68
VPS41-213ENST00000485955 SLC22A23A1A5C7 686 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 OR2W5A6NFC9 320 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 INPPL1O15357 1258 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 FGF18O76093 207 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 EGR1P18146 543 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 TNFSF4P23510 183 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 DUSP1P28562 367 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 HOXA7P31268 230 aaPredicted RBP4.56□□□□□ -1.68
VPS41-213ENST00000485955 HOXD12P35452 270 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 IGHMBP2P38935 993 aaKnown RBP4.56□□□□□ -1.68
VPS41-213ENST00000485955 RPS13P62277 151 aaKnown RBP4.56□□□□□ -1.68
VPS41-213ENST00000485955 HSF1Q00613 529 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 ELF2Q15723 593 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 SLC5A9Q2M3M2 681 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 ZNF260Q3ZCT1 412 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 USP17L6PQ6QN14 398 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 KSR2Q6VAB6 950 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 KYAT3Q6YP21 454 aaKnown RBP4.56□□□□□ -1.68
VPS41-213ENST00000485955 CLASRPQ8N2M8 674 aaKnown RBP4.56□□□□□ -1.68
VPS41-213ENST00000485955 ZNF548Q8NEK5 533 aaPredicted RBP4.56□□□□□ -1.68
VPS41-213ENST00000485955 PARD3BQ8TEW8 1205 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 TRMT61AQ96FX7 289 aaKnown RBP4.56□□□□□ -1.68
VPS41-213ENST00000485955 P2RY11Q96G91 374 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 VCPIP1Q96JH7 1222 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 SCNM1Q9BWG6 230 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 FOXP1Q9H334 677 aaPredicted RBP4.56□□□□□ -1.68
VPS41-213ENST00000485955 ASNSD1Q9NWL6 643 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 RGL1Q9NZL6 768 aa4.56□□□□□ -1.68
VPS41-213ENST00000485955 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.56□□□□□ -1.68
VPS41-213ENST00000485955 FAM234BA2RU67 622 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 C2CD4BA6NLJ0 364 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 DHHO43323 396 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 GNALP38405 381 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 CPA2P48052 419 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 VPS41P49754 854 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 AGTR2P50052 363 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 PLCD1P51178 756 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 ZNF84P51523 738 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 LINC00205P59089 165 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 CNGA3Q16281 694 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 SLC35G1Q2M3R5 365 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 CCDC144NLQ6NUI1 221 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 TLDC1Q6P9B6 456 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 RBM44Q6ZP01 1051 aaKnown RBP4.55□□□□□ -1.68
VPS41-213ENST00000485955 ANKRD13BQ86YJ7 626 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 BRI3BPQ8WY22 251 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 AKAP1Q92667 903 aaKnown RBP eCLIP4.55□□□□□ -1.68
VPS41-213ENST00000485955 CELF1Q92879 486 aaKnown RBP4.55□□□□□ -1.68
VPS41-213ENST00000485955 GRAMD1AQ96CP6 724 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 RIPOR3Q96MK2 946 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.55□□□□□ -1.688e-21■■■■■ 34.6
VPS41-213ENST00000485955 FSCN3Q9NQT6 498 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 RXFP3Q9NSD7 469 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 FNIP2Q9P278 1114 aa4.55□□□□□ -1.68
VPS41-213ENST00000485955 TTBK1Q5TCY1 1321 aaPredicted RBP4.54□□□□□ -1.68
VPS41-213ENST00000485955 CTIFO43310 598 aaKnown RBP4.54□□□□□ -1.68
VPS41-213ENST00000485955 VIPP01282 170 aa4.54□□□□□ -1.68
VPS41-213ENST00000485955 TMEM191BP0C7N4 346 aa4.54□□□□□ -1.68
VPS41-213ENST00000485955 ST6GAL1P15907 406 aa4.54□□□□□ -1.68
VPS41-213ENST00000485955 NDUFS1P28331 727 aa4.54□□□□□ -1.68
VPS41-213ENST00000485955 TM4SF4P48230 202 aa4.54□□□□□ -1.68
VPS41-213ENST00000485955 CCT4P50991 539 aaKnown RBP4.54□□□□□ -1.68
VPS41-213ENST00000485955 SRSF1Q07955 248 aaKnown RBP eCLIP4.54□□□□□ -1.68
VPS41-213ENST00000485955 MTA1Q13330 715 aa4.54□□□□□ -1.68
VPS41-213ENST00000485955 MTX1Q13505 466 aa4.54□□□□□ -1.68
VPS41-213ENST00000485955 MAPKAPK3Q16644 382 aa4.54□□□□□ -1.68
VPS41-213ENST00000485955 LEXMQ3ZCV2 418 aa4.54□□□□□ -1.68
VPS41-213ENST00000485955 ACSM6Q6P461 480 aa4.54□□□□□ -1.68
VPS41-213ENST00000485955 DPP9Q86TI2 863 aa4.54□□□□□ -1.68
VPS41-213ENST00000485955 RFX6Q8HWS3 928 aa4.54□□□□□ -1.68
VPS41-213ENST00000485955 OVCA2Q8WZ82 227 aa4.54□□□□□ -1.68
VPS41-213ENST00000485955 PIGKQ92643 395 aa4.54□□□□□ -1.68
VPS41-213ENST00000485955 ANO9A1A5B4 782 aa4.53□□□□□ -1.68
VPS41-213ENST00000485955 KCNAB3O43448 404 aa4.53□□□□□ -1.68
VPS41-213ENST00000485955 CD63P08962 238 aa4.53□□□□□ -1.68
VPS41-213ENST00000485955 SRGAP2BP0DMP2 458 aa4.53□□□□□ -1.68
VPS41-213ENST00000485955 IDEP14735 1019 aa4.53□□□□□ -1.68
VPS41-213ENST00000485955 ITGB6P18564 788 aa4.53□□□□□ -1.68
VPS41-213ENST00000485955 MMP8P22894 467 aa4.53□□□□□ -1.68
VPS41-213ENST00000485955 RPS6KB1P23443 525 aa4.53□□□□□ -1.68
VPS41-213ENST00000485955 STAT6P42226 847 aa4.53□□□□□ -1.68
VPS41-213ENST00000485955 GSTM5P46439 218 aa4.53□□□□□ -1.68
VPS41-213ENST00000485955 SOX2P48431 317 aa4.53□□□□□ -1.68
VPS41-213ENST00000485955 FOXG1P55316 489 aaPredicted RBP4.53□□□□□ -1.68
VPS41-213ENST00000485955 LONRF1Q17RB8 773 aa4.53□□□□□ -1.68
VPS41-213ENST00000485955 P3H1Q32P28 736 aa4.53□□□□□ -1.68
VPS41-213ENST00000485955 C16orf89Q6UX73 402 aa4.53□□□□□ -1.68
VPS41-213ENST00000485955 OR52L2PQ8NGH6 319 aa4.53□□□□□ -1.68
VPS41-213ENST00000485955 GJA10Q969M2 543 aa4.53□□□□□ -1.68
VPS41-213ENST00000485955 ZFYVE19Q96K21 471 aa4.53□□□□□ -1.68
VPS41-213ENST00000485955 WACQ9BTA9 647 aa4.53□□□□□ -1.68
VPS41-213ENST00000485955 ELOVL1Q9BW60 279 aa4.53□□□□□ -1.68
VPS41-213ENST00000485955 TMEM45AQ9NWC5 275 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms