RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 HEMK1Q9Y5R4 338 aaPredicted RBP3.81□□□□□ -1.8
VPS50-216ENST00000484954 SPATA31A1Q5TZJ5 1347 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 PMM2O15305 246 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 NCK2O43639 380 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 MYL3P08590 195 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 ALADP13716 330 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 ST6GAL1P15907 406 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 TNFRSF1BP20333 461 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 GABRB3P28472 473 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 CPA2P48052 419 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 VPS41P49754 854 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 RPS13P62277 151 aaKnown RBP3.8□□□□□ -1.8
VPS50-216ENST00000484954 MTX1Q13505 466 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 STIM1Q13586 685 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 PMS2P11Q13670 270 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 COBLL1Q53SF7 1204 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 EARS2Q5JPH6 523 aaKnown RBP3.8□□□□□ -1.8
VPS50-216ENST00000484954 TMEM63BQ5T3F8 832 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 ANO7Q6IWH7 933 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 CAMK1GQ96NX5 476 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 NAA15Q9BXJ9 866 aaKnown RBP3.8□□□□□ -1.8
VPS50-216ENST00000484954 MAGEB5Q9BZ81 275 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 ZBTB40Q9NUA8 1239 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 ASNSD1Q9NWL6 643 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 ZMYND8Q9ULU4 1186 aaPredicted RBP3.8□□□□□ -1.8
VPS50-216ENST00000484954 MAN2B2Q9Y2E5 1009 aa3.8□□□□□ -1.8
VPS50-216ENST00000484954 TTBK1Q5TCY1 1321 aaPredicted RBP3.79□□□□□ -1.8
VPS50-216ENST00000484954 CCDC187A0A096LP49 1063 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 APOL1O14791 398 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 PPM1GO15355 546 aaPredicted RBP3.79□□□□□ -1.8
VPS50-216ENST00000484954 COQ9O75208 318 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 FGF2P09038 288 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 TMEM191BP0C7N4 346 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 PSG1P11464 419 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 HARSP12081 509 aaKnown RBP3.79□□□□□ -1.8
VPS50-216ENST00000484954 NDUFS1P28331 727 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 CCKBRP32239 447 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 POLGP54098 1239 aaPredicted RBP3.79□□□□□ -1.8
VPS50-216ENST00000484954 ELF2Q15723 593 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 CNGA3Q16281 694 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 FAM110CQ1W6H9 321 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 MRNIPQ6NTE8 343 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 HIBCHQ6NVY1 386 aaPredicted RBP3.79□□□□□ -1.8
VPS50-216ENST00000484954 KYAT3Q6YP21 454 aaKnown RBP3.79□□□□□ -1.8
VPS50-216ENST00000484954 ZNF793Q6ZN11 406 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 RBM44Q6ZP01 1051 aaKnown RBP3.79□□□□□ -1.8
VPS50-216ENST00000484954 PIK3AP1Q6ZUJ8 805 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 RFX6Q8HWS3 928 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 GLIS1Q8NBF1 620 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 ABHD5Q8WTS1 349 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 AKAP1Q92667 903 aaKnown RBP eCLIP3.79□□□□□ -1.8
VPS50-216ENST00000484954 SARGQ9BW04 601 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 ZCWPW1Q9H0M4 648 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 EBF3Q9H4W6 596 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 CHPF2Q9P2E5 772 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 MAFFQ9ULX9 164 aa3.79□□□□□ -1.8
VPS50-216ENST00000484954 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP3.78□□□□□ -1.8
VPS50-216ENST00000484954 A0A1W2PPC1 479 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 FAM234BA2RU67 622 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 ZSCAN9O15535 394 aaPredicted RBP3.78□□□□□ -1.8
VPS50-216ENST00000484954 DHHO43323 396 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 CCNT2O60583 730 aaKnown RBP3.78□□□□□ -1.8
VPS50-216ENST00000484954 MYL4P12829 197 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 RPS6KB1P23443 525 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 SLC5A2P31639 672 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 IGHMBP2P38935 993 aaKnown RBP3.78□□□□□ -1.8
VPS50-216ENST00000484954 SOX2P48431 317 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 DGKQP52824 942 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 HSF1Q00613 529 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 MTA1Q13330 715 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.78□□□□□ -1.8
VPS50-216ENST00000484954 C16orf89Q6UX73 402 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 UBE2Q1Q7Z7E8 422 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 SAMD14Q8IZD0 417 aaPredicted RBP3.78□□□□□ -1.8
VPS50-216ENST00000484954 CLASRPQ8N2M8 674 aaKnown RBP3.78□□□□□ -1.8
VPS50-216ENST00000484954 ARFGAP1Q8N6T3 406 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 PIGKQ92643 395 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 CELF1Q92879 486 aaKnown RBP3.78□□□□□ -1.8
VPS50-216ENST00000484954 P2RY11Q96G91 374 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 ZFYVE19Q96K21 471 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 MOV10Q9HCE1 1003 aaKnown RBP3.78□□□□□ -1.8
VPS50-216ENST00000484954 METTL14Q9HCE5 456 aaKnown RBP3.78□□□□□ -1.8
VPS50-216ENST00000484954 FSCN3Q9NQT6 498 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 TMEM45AQ9NWC5 275 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 TMOD4Q9NZQ9 345 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 ZNF580Q9UK33 172 aa3.78□□□□□ -1.8
VPS50-216ENST00000484954 OR2W5A6NFC9 320 aa3.77□□□□□ -1.81
VPS50-216ENST00000484954 TOMM40O96008 361 aa3.77□□□□□ -1.81
VPS50-216ENST00000484954 EGR1P18146 543 aa3.77□□□□□ -1.81
VPS50-216ENST00000484954 DUSP1P28562 367 aa3.77□□□□□ -1.81
VPS50-216ENST00000484954 HOXD12P35452 270 aa3.77□□□□□ -1.81
VPS50-216ENST00000484954 STAT6P42226 847 aa3.77□□□□□ -1.81
VPS50-216ENST00000484954 ME1P48163 572 aa3.77□□□□□ -1.81
VPS50-216ENST00000484954 AGTR2P50052 363 aa3.77□□□□□ -1.81
VPS50-216ENST00000484954 ZNF84P51523 738 aa3.77□□□□□ -1.81
VPS50-216ENST00000484954 SEMA3BQ13214 749 aa3.77□□□□□ -1.81
VPS50-216ENST00000484954 ATP1A4Q13733 1029 aa3.77□□□□□ -1.81
VPS50-216ENST00000484954 SAFBQ15424 915 aaKnown RBP eCLIP3.77□□□□□ -1.81
VPS50-216ENST00000484954 SLC5A9Q2M3M2 681 aa3.77□□□□□ -1.81
VPS50-216ENST00000484954 SLC35G1Q2M3R5 365 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms