RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ELF2Q15723 593 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 TMEM215Q68D42 235 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 MSANTD2Q6P1R3 559 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 CPXM2Q8N436 756 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 DCLK3Q9C098 648 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 POLMQ9NP87 494 aaPredicted RBP14.75□□□□□ -0.05
UPF3A-204ENST00000475218 CACNA2D2Q9NY47 1150 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 STOML2Q9UJZ1 356 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 ZNF510Q9Y2H8 683 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 RAD54BQ9Y620 910 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 MUC22E2RYF6 1773 aaPredicted RBP14.74□□□□□ -0.05
UPF3A-204ENST00000475218 BECN2A8MW95 431 aa14.74□□□□□ -0.05
UPF3A-204ENST00000475218 RHOBTB1O94844 696 aa14.74□□□□□ -0.05
UPF3A-204ENST00000475218 IGLV3-27P01718 113 aa14.74□□□□□ -0.05
UPF3A-204ENST00000475218 SGSHP51688 502 aa14.74□□□□□ -0.05
UPF3A-204ENST00000475218 PREPLQ4J6C6 727 aaPredicted RBP14.74□□□□□ -0.05
UPF3A-204ENST00000475218 DENND1BQ6P3S1 775 aa14.74□□□□□ -0.05
UPF3A-204ENST00000475218 SIX6OS1Q8N1H7 587 aa14.74□□□□□ -0.05
UPF3A-204ENST00000475218 PLD4Q96BZ4 506 aa14.74□□□□□ -0.05
UPF3A-204ENST00000475218 IPO9Q96P70 1041 aaKnown RBP14.74□□□□□ -0.05
UPF3A-204ENST00000475218 CRACR2AQ9BSW2 395 aa14.74□□□□□ -0.05
UPF3A-204ENST00000475218 SLC6A17Q9H1V8 727 aa14.74□□□□□ -0.05
UPF3A-204ENST00000475218 CD93Q9NPY3 652 aa14.74□□□□□ -0.05
UPF3A-204ENST00000475218 VPS45Q9NRW7 570 aa14.74□□□□□ -0.05
UPF3A-204ENST00000475218 CYTH4Q9UIA0 394 aa14.74□□□□□ -0.05
UPF3A-204ENST00000475218 AJAP1Q9UKB5 411 aaPredicted RBP14.74□□□□□ -0.05
UPF3A-204ENST00000475218 STRIP2Q9ULQ0 834 aa14.74□□□□□ -0.05
UPF3A-204ENST00000475218 PATE3B3GLJ2 98 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 ALDH1A2O94788 518 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 NDUFV2P19404 249 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 SLC9A1P19634 815 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 HOXD9P28356 352 aaPredicted RBP14.73□□□□□ -0.05
UPF3A-204ENST00000475218 CHKAP35790 457 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 PTGER3P43115 390 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 GPD2P43304 727 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 LIMK1P53667 647 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 CREB5Q02930 508 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 ENPP2Q13822 863 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 TRIM65Q6PJ69 517 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 TRMT11Q7Z4G4 463 aaKnown RBP14.73□□□□□ -0.05
UPF3A-204ENST00000475218 CHPFQ8IZ52 775 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 IPO4Q8TEX9 1081 aaKnown RBP14.73□□□□□ -0.05
UPF3A-204ENST00000475218 ABCC13Q9NSE7 274 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 OLA1Q9NTK5 396 aaKnown RBP14.73□□□□□ -0.05
UPF3A-204ENST00000475218 CALCOCO1Q9P1Z2 691 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 HBS1LQ9Y450 684 aaKnown RBP14.73□□□□□ -0.05
UPF3A-204ENST00000475218 CEP192Q8TEP8 1941 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 FOXD2O60548 495 aaPredicted RBP14.73□□□□□ -0.05
UPF3A-204ENST00000475218 CAVIN2O95810 425 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 CETN1Q12798 172 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 AASDHQ4L235 1098 aaPredicted RBP14.73□□□□□ -0.05
UPF3A-204ENST00000475218 DPY19L2P1Q6NXN4 242 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 TMEFF1Q8IYR6 380 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 IRGQQ8WZA9 623 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 HSFY1Q96LI6 401 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 CLSTN2Q9H4D0 955 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 SIX2Q9NPC8 291 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 UBE2TQ9NPD8 197 aaPredicted RBP14.73□□□□□ -0.05
UPF3A-204ENST00000475218 TMEM74BQ9NUR3 256 aa14.73□□□□□ -0.05
UPF3A-204ENST00000475218 LNP1A1A4G5 178 aa14.72□□□□□ -0.05
UPF3A-204ENST00000475218 STILQ15468 1287 aa14.72□□□□□ -0.05
UPF3A-204ENST00000475218 STPG1Q5TH74 334 aa14.72□□□□□ -0.05
UPF3A-204ENST00000475218 RNF43Q68DV7 783 aa14.72□□□□□ -0.05
UPF3A-204ENST00000475218 C11orf74Q86VG3 221 aa14.72□□□□□ -0.05
UPF3A-204ENST00000475218 C12orf50Q8NA57 414 aaPredicted RBP14.72□□□□□ -0.05
UPF3A-204ENST00000475218 SORCS1Q8WY21 1168 aa14.72□□□□□ -0.05
UPF3A-204ENST00000475218 MYEOVQ96EZ4 313 aa14.72□□□□□ -0.05
UPF3A-204ENST00000475218 MIS12Q9H081 205 aa14.72□□□□□ -0.05
UPF3A-204ENST00000475218 BCCIPQ9P287 314 aaKnown RBP eCLIP14.72□□□□□ -0.05
UPF3A-204ENST00000475218 STON1Q9Y6Q2 735 aa14.72□□□□□ -0.05
UPF3A-204ENST00000475218 CKAP5Q14008 2032 aa14.72□□□□□ -0.05
UPF3A-204ENST00000475218 GON4LQ3T8J9 2241 aa14.72□□□□□ -0.05
UPF3A-204ENST00000475218 CNOT1A5YKK6 2376 aaKnown RBP14.72□□□□□ -0.05
UPF3A-204ENST00000475218 TSPAN3O60637 253 aa14.71□□□□□ -0.05
UPF3A-204ENST00000475218 LTFP02788 710 aa14.71□□□□□ -0.05
UPF3A-204ENST00000475218 IL12RB1P42701 662 aa14.71□□□□□ -0.05
UPF3A-204ENST00000475218 DPCR1Q3MIW9 517 aa14.71□□□□□ -0.05
UPF3A-204ENST00000475218 FAM133BQ5BKY9 247 aaKnown RBP14.71□□□□□ -0.05
UPF3A-204ENST00000475218 NUDT18Q6ZVK8 323 aa14.71□□□□□ -0.05
UPF3A-204ENST00000475218 SCUBE3Q8IX30 993 aa14.71□□□□□ -0.05
UPF3A-204ENST00000475218 WFDC5Q8TCV5 224 aa14.71□□□□□ -0.05
UPF3A-204ENST00000475218 RNF139Q8WU17 664 aa14.71□□□□□ -0.05
UPF3A-204ENST00000475218 MRGPRX1Q96LB2 322 aa14.71□□□□□ -0.05
UPF3A-204ENST00000475218 SLC4A5Q9BY07 1137 aa14.71□□□□□ -0.05
UPF3A-204ENST00000475218 THAP10Q9P2Z0 257 aaPredicted RBP14.71□□□□□ -0.05
UPF3A-204ENST00000475218 TJP2Q9UDY2 1190 aa14.71□□□□□ -0.05
UPF3A-204ENST00000475218 IGHV1OR15-9A0A0B4J2B8 117 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 GOLGA6L7A0A1B0GV03 622 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 KRT5P13647 590 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 PON1P27169 355 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 HLA-FP30511 346 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 SLC6A4P31645 630 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 DHPSP49366 369 aaPredicted RBP14.7□□□□□ -0.06
UPF3A-204ENST00000475218 NADSYN1Q6IA69 706 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 ARMCX6Q7L4S7 300 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 PGBD3Q8N328 593 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 WDTC1Q8N5D0 677 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 MLKLQ8NB16 471 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 DDI1Q8WTU0 396 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms