RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 GUCY2FP51841 1108 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 SSRP1Q08945 709 aaKnown RBP8.51□□□□□ -1.05
USP54-211ENST00000474929 KLRB1Q12918 225 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 BNIP3Q12983 259 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 AAMPQ13685 434 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 CLCA4Q14CN2 919 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 NECTIN1Q15223 517 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 NTRK3Q16288 839 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 SEZ6Q53EL9 994 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 PRAMEF14Q5SWL7 426 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 HECTD3Q5T447 861 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 TTC22Q5TAA0 569 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 C1QL3Q5VWW1 255 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 ZNF776Q68DI1 518 aaPredicted RBP8.51□□□□□ -1.05
USP54-211ENST00000474929 JADE1Q6IE81 842 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 NAPEPLDQ6IQ20 393 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 HTR3DQ70Z44 454 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 DSG4Q86SJ6 1040 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 CATSPER3Q86XQ3 398 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 NT5DC4Q86YG4 428 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 MFSD2AQ8NA29 543 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 BICD1Q96G01 975 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 ATXN7L3BQ96GX2 97 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 PRR11Q96HE9 360 aaPredicted RBP8.51□□□□□ -1.05
USP54-211ENST00000474929 PKMYT1Q99640 499 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 RUBCNLQ9H714 662 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 NLGN3Q9NZ94 848 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 LRWD1Q9UFC0 647 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 GTF3C4Q9UKN8 822 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 CRYBG3Q68DQ2 2970 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 NUMA1Q14980 2115 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 TRIM38O00635 465 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 COCHO43405 550 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 RTN3O95197 1032 aaPredicted RBP8.5□□□□□ -1.05
USP54-211ENST00000474929 WNT1P04628 370 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 CISD3P0C7P0 127 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 SPATA31C1P0DKV0 1188 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 POU5F1Q01860 360 aaKnown RBP8.5□□□□□ -1.05
USP54-211ENST00000474929 PDE4CQ08493 712 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 TAF10Q12962 218 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 NPY5RQ15761 445 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 CAPRIN2Q6IMN6 1127 aaKnown RBP8.5□□□□□ -1.05
USP54-211ENST00000474929 FOXR1Q6PIV2 292 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 PIK3AP1Q6ZUJ8 805 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 SV2AQ7L0J3 742 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 TAS1R3Q7RTX0 852 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 TIPARPQ7Z3E1 657 aaKnown RBP8.5□□□□□ -1.05
USP54-211ENST00000474929 ADGRG4Q8IZF6 3080 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 PDCL2Q8N4E4 241 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 OR2T34Q8NGX1 318 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 SERAC1Q96JX3 654 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 C8orf48Q96LL4 319 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 RWDD1Q9H446 243 aaPredicted RBP8.5□□□□□ -1.05
USP54-211ENST00000474929 BRMS1Q9HCU9 246 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 CYLDQ9NQC7 956 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 DONSONQ9NYP3 566 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 FBXO10Q9UK96 956 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 FZD4Q9ULV1 537 aa8.5□□□□□ -1.05
USP54-211ENST00000474929 SCN1AP35498 2009 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 SPENQ96T58 3664 aaKnown RBP8.49□□□□□ -1.05
USP54-211ENST00000474929 CPLX1O14810 134 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 PLD2O14939 933 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 HNRNPRO43390 633 aaKnown RBP8.49□□□□□ -1.05
USP54-211ENST00000474929 RNASEH1O60930 286 aaKnown RBP8.49□□□□□ -1.05
USP54-211ENST00000474929 RTN2O75298 545 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 OR52Z1P0C646 297 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 PRKCHP24723 683 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 SLC5A2P31639 672 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 ABCD1P33897 745 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 TXKP42681 527 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 LIG4P49917 911 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 MFAP3P55082 362 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 LACTB2Q53H82 288 aaPredicted RBP8.49□□□□□ -1.05
USP54-211ENST00000474929 SNX30Q5VWJ9 437 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 B4GALNT3Q6L9W6 998 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 TPGS1Q6ZTW0 290 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 TMC6Q7Z403 805 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 JAMLQ86YT9 394 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 TOP6BLQ8N6T0 577 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 IFI44Q8TCB0 444 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 GANCQ8TET4 914 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 FAM212AQ96EL1 285 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 ZBTB45Q96K62 511 aaPredicted RBP8.49□□□□□ -1.05
USP54-211ENST00000474929 TCEANC2Q96MN5 208 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 CIPCQ9C0C6 399 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 STRADBQ9C0K7 418 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 LSG1Q9H089 658 aaKnown RBP8.49□□□□□ -1.05
USP54-211ENST00000474929 BHMT2Q9H2M3 363 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 ELOVL2Q9NXB9 296 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 CDH9Q9ULB4 789 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 DMTF1Q9Y222 760 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 SNX14Q9Y5W7 946 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 UBE4BO95155 1302 aa8.49□□□□□ -1.05
USP54-211ENST00000474929 WIPF3A6NGB9 483 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 FAM47DPA6NHR8 397 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 HNRNPDLO14979 420 aaKnown RBP8.48□□□□□ -1.05
USP54-211ENST00000474929 SLC16A4O15374 487 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 NVLO15381 856 aaKnown RBP8.48□□□□□ -1.05
USP54-211ENST00000474929 MTSS1O43312 755 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 NOBOXO60393 691 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms