RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 TBC1D30Q9Y2I9 924 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 SCN9AQ15858 1988 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 SLC15A5A6NIM6 579 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 C19orf81C9J6K1 198 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 H0YJX3 145 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 M0QYV0 167 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 BUD23O43709 281 aaKnown RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 STAMBPO95630 424 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 ZCCHC18P0CG32 403 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 PGAM1P18669 254 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 IL1R2P27930 398 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 MAGEA3P43357 314 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 SEMA5AQ13591 1074 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 KCNT1Q5JUK3 1230 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 GRTP1Q5TC63 336 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 HEATR6Q6AI08 1181 aaKnown RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 UNC5AQ6ZN44 842 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 SPATA24Q86W54 205 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 AHI1Q8N157 1196 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 AFAP1L2Q8N4X5 818 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 CHST13Q8NET6 341 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 JOSD2Q8TAC2 188 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 RIN3Q8TB24 985 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 ACSF2Q96CM8 615 aaPredicted RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 TUBGCP5Q96RT8 1024 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 ACO2Q99798 780 aaKnown RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 TEX13BQ9BXU2 312 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 VTI1BQ9UEU0 232 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 DMTF1Q9Y222 760 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 SMCHD1A6NHR9 2005 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 CCDC195A0A1B0GUA6 201 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 TTLL13PA6NNM8 815 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 TXNDC9O14530 226 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 ALDH1A2O94788 518 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 STAU1O95793 577 aaKnown RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 VAV1P15498 845 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 DNAJB2P25686 324 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 L1CAMP32004 1257 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 CPOXP36551 454 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 HARS2P49590 506 aaKnown RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 SERPINB8P50452 374 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 ABCE1P61221 599 aaKnown RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 MRPS5P82675 430 aaKnown RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 CYLC2Q14093 348 aaPredicted RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 FRG1Q14331 258 aaKnown RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 HERC3Q15034 1050 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 GRAMD1BQ3KR37 738 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.31□□□□□ -1.4
HERC4-209ENST00000473533 ZNF394Q53GI3 561 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 SPANXN3Q5MJ09 141 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 TEDDM1Q5T9Z0 273 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 MBLAC2Q68D91 279 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 SNRNP48Q6IEG0 339 aaKnown RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 OR6B2Q6IFH4 312 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 BORAQ6PGQ7 559 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 PDZD4Q76G19 769 aaPredicted RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 PSTKQ8IV42 348 aaKnown RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 PLD5Q8N7P1 536 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 CPNE1Q99829 537 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 APOL6Q9BWW8 343 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 ADAM33Q9BZ11 813 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 ASB7Q9H672 318 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 USP29Q9HBJ7 922 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 SF3B1O75533 1304 aaKnown RBP eCLIP6.31□□□□□ -1.45e-6■■■■■ 112
HERC4-209ENST00000473533 C2CD4BA6NLJ0 364 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 PLIN3O60664 434 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 SIN3BO75182 1162 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 MICAL2O94851 1124 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 CLPTM1O96005 669 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 C6orf222P0C671 652 aaPredicted RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 CCDC166P0CW27 439 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 TGFB3P10600 412 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 KITP10721 976 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 RALBP11234 206 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 SSTR3P32745 418 aaPredicted RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 SPRP35270 261 aaPredicted RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 GP5P40197 560 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 SOX10P56693 466 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 RAB15P59190 212 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 TBL3Q12788 808 aaKnown RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 CAPSQ13938 189 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 CNGA3Q16281 694 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 RABGAP1LQ5R372 815 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 OGFRL1Q5TC84 451 aaPredicted RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 C1orf228Q6PIY5 440 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 TSHZ1Q6ZSZ6 1077 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 IGDCC3Q8IVU1 814 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 KBTBD2Q8IY47 623 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 TFAP2BQ92481 460 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 ZBTB45Q96K62 511 aaPredicted RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 CATSPER2Q96P56 530 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 GMLQ99445 158 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 STK32BQ9NY57 414 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 MOCS1Q9NZB8 636 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 SAE1Q9UBE0 346 aaPredicted RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 NXF1Q9UBU9 619 aaKnown RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 HESX1Q9UBX0 185 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 STK39Q9UEW8 545 aa6.31□□□□□ -1.4
HERC4-209ENST00000473533 CNOT11Q9UKZ1 510 aaKnown RBP6.31□□□□□ -1.4
HERC4-209ENST00000473533 IGKV6D-21A0A0A0MT36 114 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms