RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	CEP85	Q6P2H3	762 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	KIRREL2	Q6UWL6	708 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	HERC6	Q8IVU3	1022 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	FTSJ3	Q8IY81	847 aa	Known RBP	4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	FAM71D	Q8N9W8	422 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	TERB1	Q8NA31	727 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	SIMC1	Q8NDZ2	872 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	CPT1B	Q92523	772 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	RUBCN	Q92622	972 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	MCRS1	Q96EZ8	462 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	PRR11	Q96HE9	360 aa	Predicted RBP	4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	FAR2	Q96K12	515 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	UROC1	Q96N76	676 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	TRAPPC9	Q96Q05	1148 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	KRTAP4-5	Q9BYR2	181 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	SAP30L	Q9HAJ7	183 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	G6PC2	Q9NQR9	355 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	LIN7C	Q9NUP9	197 aa	Known RBP	4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	FBXO28	Q9NVF7	368 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	NDUFAF4	Q9P032	175 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	FZD4	Q9ULV1	537 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	ST3GAL5	Q9UNP4	418 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	SPATA31A1	Q5TZJ5	1347 aa		4.38	□□□□□ -1.71
PTCD3-209	ENST00000472044	HMX3	A6NHT5	357 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	SLC38A8	A6NNN8	435 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	KIF28P	B7ZC32	967 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044		B9A039	149 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	NKX2-8	O15522	239 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	PPP6R2	O75170	966 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	JTB	O76095	146 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	PDE8B	O95263	885 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	TK1	P04183	234 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	ALAD	P13716	330 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	APEH	P13798	732 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	FPR3	P25089	353 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	PLA2G5	P39877	138 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	PRKAA2	P54646	552 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	CYP4F2	P78329	520 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	RBM6	P78332	1123 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	HOXA4	Q00056	320 aa	Predicted RBP	4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	SF3A3	Q12874	501 aa	Known RBP eCLIP	4.37	□□□□□ -1.71	2e-9	■■□□□ 14
PTCD3-209	ENST00000472044	SMAD1	Q15797	465 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	AAK1	Q2M2I8	961 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	P3H1	Q32P28	736 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	ADCK5	Q3MIX3	580 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	ZNF569	Q5MCW4	686 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	OLFML1	Q6UWY5	402 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	SLC29A4	Q7RTT9	530 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	KRT27	Q7Z3Y8	459 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	BCDIN3D	Q7Z5W3	292 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	RASAL3	Q86YV0	1011 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	OR52L2P	Q8NGH6	319 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	HMGB4	Q8WW32	186 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	NPIPB3	Q92617	1050 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	REPS1	Q96D71	796 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	REXO5	Q96IC2	774 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	ZSCAN31	Q96LW9	406 aa	Predicted RBP	4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	DUSP26	Q9BV47	211 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	MECR	Q9BV79	373 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	KRTAP9-3	Q9BYQ3	159 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	PCED1A	Q9H1Q7	454 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	TAF1D	Q9H5J8	278 aa	Predicted RBP	4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	ELAC1	Q9H777	363 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	SEPSECS	Q9HD40	501 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	TMLHE	Q9NVH6	421 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	SAGE1	Q9NXZ1	904 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	TFCP2L1	Q9NZI6	479 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	FEM1B	Q9UK73	627 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	GTF2A1L	Q9UNN4	478 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	PCDHB7	Q9Y5E2	793 aa		4.37	□□□□□ -1.71
PTCD3-209	ENST00000472044	COL11A2	P13942	1736 aa	Predicted RBP	4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	FAM90A20P	A6NIJ5	464 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	BTBD19	C9JJ37	291 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	NPHP1	O15259	732 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	PRAMEF2	O60811	474 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	MT-CO3	P00414	261 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	TFRC	P02786	760 aa	Known RBP	4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	CYP3A4	P08684	503 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	ATF7	P17544	494 aa	Predicted RBP	4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	SERPINA4	P29622	427 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	GALNS	P34059	522 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	AARS	P49588	968 aa	Known RBP eCLIP	4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	ACTR2	P61160	394 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	TLE3	Q04726	772 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	KLF10	Q13118	480 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	CUL4B	Q13620	913 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	CBFB	Q13951	182 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	FHL2	Q14192	279 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	DCTN1	Q14203	1278 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	GALNTL6	Q49A17	601 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	C16orf89	Q6UX73	402 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	ANKS1B	Q7Z6G8	1248 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	UBXN10	Q96LJ8	280 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	MMS19	Q96T76	1030 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	NPAS1	Q99742	590 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	RNF26	Q9BY78	433 aa	Predicted RBP	4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	CIPC	Q9C0C6	399 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	BRD8	Q9H0E9	1235 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	ABHD16B	Q9H3Z7	469 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	CDCP1	Q9H5V8	836 aa		4.36	□□□□□ -1.71

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