RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 NDRG1Q92597 394 aaKnown RBP17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 PLD4Q96BZ4 506 aa17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 NT5C1BQ96P26 610 aa17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 CACNA2D2Q9NY47 1150 aa17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 CDX4O14627 284 aaPredicted RBP17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 NPC1O15118 1278 aa17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 ZNF217O75362 1048 aa17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 CYBBP04839 570 aa17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 PAEPP09466 180 aa17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 PMLP29590 882 aa17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 HOXD12P35452 270 aa17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 MFAP3P55082 362 aa17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 RPL6Q02878 288 aaKnown RBP17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 ADIGQ0VDE8 80 aa17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 LMAN2Q12907 356 aa17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 TRIP4Q15650 581 aaPredicted RBP17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 PKDCCQ504Y2 493 aa17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 TRIM61Q5EBN2 209 aa17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 PEAR1Q5VY43 1037 aaPredicted RBP17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 TTI2Q6NXR4 508 aa17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 LCLAT1Q6UWP7 414 aa17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 FAM217AQ8IXS0 508 aa17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 SCML4Q8N228 414 aa17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 UBA3Q8TBC4 463 aa17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 IPO9Q96P70 1041 aaKnown RBP17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 NUSAP1Q9BXS6 441 aaKnown RBP17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 TMEM74BQ9NUR3 256 aa17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 PILRBQ9UKJ0 227 aa17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 RAD54BQ9Y620 910 aa17.34■□□□□ 0.37
CCDC28B-204ENST00000469003 LAMA1P25391 3075 aa17.33■□□□□ 0.37
CCDC28B-204ENST00000469003 IGHV1OR15-9A0A0B4J2B8 117 aa17.33■□□□□ 0.36
CCDC28B-204ENST00000469003 P4HA2O15460 535 aa17.33■□□□□ 0.36
CCDC28B-204ENST00000469003 CETN1Q12798 172 aa17.33■□□□□ 0.36
CCDC28B-204ENST00000469003 GEN1Q17RS7 908 aa17.33■□□□□ 0.36
CCDC28B-204ENST00000469003 BSPRYQ5W0U4 402 aa17.33■□□□□ 0.36
CCDC28B-204ENST00000469003 KLHL10Q6JEL2 608 aa17.33■□□□□ 0.36
CCDC28B-204ENST00000469003 TMEM270Q6UE05 265 aa17.33■□□□□ 0.36
CCDC28B-204ENST00000469003 ANKS1BQ7Z6G8 1248 aa17.33■□□□□ 0.36
CCDC28B-204ENST00000469003 FMNL3Q8IVF7 1028 aa17.33■□□□□ 0.36
CCDC28B-204ENST00000469003 SIX6OS1Q8N1H7 587 aa17.33■□□□□ 0.36
CCDC28B-204ENST00000469003 RNF139Q8WU17 664 aa17.33■□□□□ 0.36
CCDC28B-204ENST00000469003 UCMAQ8WVF2 138 aa17.33■□□□□ 0.36
CCDC28B-204ENST00000469003 PIWIL1Q96J94 861 aaKnown RBP17.33■□□□□ 0.36
CCDC28B-204ENST00000469003 SLC2A11Q9BYW1 496 aa17.33■□□□□ 0.36
CCDC28B-204ENST00000469003 CNGB3Q9NQW8 809 aa17.33■□□□□ 0.36
CCDC28B-204ENST00000469003 THAP10Q9P2Z0 257 aaPredicted RBP17.33■□□□□ 0.36
CCDC28B-204ENST00000469003 HBS1LQ9Y450 684 aaKnown RBP17.33■□□□□ 0.36
CCDC28B-204ENST00000469003 STON1Q9Y6Q2 735 aa17.33■□□□□ 0.36
CCDC28B-204ENST00000469003 ATXN2Q99700 1313 aaKnown RBP17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 BICDL2A1A5D9 508 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 YJEFN3A6XGL0 299 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 PPP1R3GB7ZBB8 358 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 WASH3PC4AMC7 463 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 E7ENQ6 273 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 BMP6P22004 513 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 ITPKAP23677 461 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 HARS2P49590 506 aaKnown RBP17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 NOVA1P51513 510 aaKnown RBP17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 ZNF132P52740 706 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 MORC3Q14149 939 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 E2F5Q15329 346 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 STILQ15468 1287 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 PSAPL1Q6NUJ1 521 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 SLC23A3Q6PIS1 610 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 PPM1KQ8N3J5 372 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 LMO3Q8TAP4 145 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 DDI1Q8WTU0 396 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 NELFBQ8WX92 580 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 TFAP2BQ92481 460 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 ERLEC1Q96DZ1 483 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 MRGPRX1Q96LB2 322 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 ABCC13Q9NSE7 274 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 CYP8B1Q9UNU6 501 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 PCDHB4Q9Y5E5 795 aa17.32■□□□□ 0.36
CCDC28B-204ENST00000469003 FRYQ5TBA9 3013 aa17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 PI4KAP42356 2102 aa17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 DAOAP59103 153 aa17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 ZNF33AQ06730 810 aa17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 ENPP2Q13822 863 aa17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 STARD3Q14849 445 aa17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 EIF4HQ15056 248 aaKnown RBP17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 CNGA2Q16280 664 aa17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 DUOXA1Q1HG43 343 aa17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 MPPE1Q53F39 396 aa17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 RABEPKQ7Z6M1 372 aa17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 DEFB119Q8N690 84 aa17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 CEP76Q8TAP6 659 aa17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 SLC35F5Q8WV83 523 aa17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 EDEM1Q92611 657 aa17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 KAT5Q92993 513 aa17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 SLC6A17Q9H1V8 727 aa17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 SFMBT1Q9UHJ3 866 aa17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 CLEC4EQ9ULY5 219 aa17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 CTNND2Q9UQB3 1225 aa17.31■□□□□ 0.36
CCDC28B-204ENST00000469003 RNF225M0QZC1 329 aaPredicted RBP17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 GABBR2O75899 941 aa17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 LATS1O95835 1130 aa17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 LCP1P13796 627 aa17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 ENGP17813 658 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms