RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 SLC12A8A0AV02 714 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 TULP2O00295 520 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 ARHGAP33O14559 1287 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 HYAL3O43820 417 aaPredicted RBP16.87■□□□□ 0.29
COL7A1-204ENST00000462475 OPHN1O60890 802 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 NDUFS2O75306 463 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 EPB41P11171 864 aaKnown RBP16.87■□□□□ 0.29
COL7A1-204ENST00000462475 CHKAP35790 457 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 TKTL1P51854 596 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 YWHAGP61981 247 aaKnown RBP eCLIP16.87■□□□□ 0.29
COL7A1-204ENST00000462475 FAM193AP78312 1265 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 SIM1P81133 766 aaPredicted RBP16.87■□□□□ 0.29
COL7A1-204ENST00000462475 ENPP2Q13822 863 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 GOLGA7BQ2TAP0 167 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 CBWD6Q4V339 395 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 CBWD3Q5JTY5 395 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 CBWD5Q5RIA9 395 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 RSRC2Q7L4I2 434 aaKnown RBP16.87■□□□□ 0.29
COL7A1-204ENST00000462475 BHLHA9Q7RTU4 235 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 RGL4Q8IZJ4 473 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 ARHGAP18Q8N392 663 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 TTC39CQ8N584 583 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 ANKRD52Q8NB46 1076 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 PIWIL1Q96J94 861 aaKnown RBP16.87■□□□□ 0.29
COL7A1-204ENST00000462475 ULBP1Q9BZM6 244 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 UBXN6Q9BZV1 441 aa16.87■□□□□ 0.29
COL7A1-204ENST00000462475 CETN3O15182 167 aa16.86■□□□□ 0.29
COL7A1-204ENST00000462475 MAOBP27338 520 aa16.86■□□□□ 0.29
COL7A1-204ENST00000462475 CD6P30203 668 aa16.86■□□□□ 0.29
COL7A1-204ENST00000462475 PNOCQ13519 176 aa16.86■□□□□ 0.29
COL7A1-204ENST00000462475 DCAF17Q5H9S7 520 aaPredicted RBP16.86■□□□□ 0.29
COL7A1-204ENST00000462475 ANKS1BQ7Z6G8 1248 aa16.86■□□□□ 0.29
COL7A1-204ENST00000462475 CPXM2Q8N436 756 aa16.86■□□□□ 0.29
COL7A1-204ENST00000462475 KDF1Q8NAX2 398 aaPredicted RBP16.86■□□□□ 0.29
COL7A1-204ENST00000462475 RBBP8NLQ8NC74 664 aaPredicted RBP16.86■□□□□ 0.29
COL7A1-204ENST00000462475 SORCS1Q8WY21 1168 aa16.86■□□□□ 0.29
COL7A1-204ENST00000462475 TOE1Q96GM8 510 aaKnown RBP16.86■□□□□ 0.29
COL7A1-204ENST00000462475 SCAND2PQ9GZW5 306 aaPredicted RBP16.86■□□□□ 0.29
COL7A1-204ENST00000462475 PRDM16Q9HAZ2 1276 aa16.86■□□□□ 0.29
COL7A1-204ENST00000462475 USP36Q9P275 1121 aaKnown RBP16.86■□□□□ 0.29
COL7A1-204ENST00000462475 STRIP2Q9ULQ0 834 aa16.86■□□□□ 0.29
COL7A1-204ENST00000462475 KCNJ18B7U540 433 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 STX10O60499 249 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 ZBED1O96006 694 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 CD59P13987 128 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 PRKCHP24723 683 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 PDE4CQ08493 712 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 ZNF234Q14588 700 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 PLEKHG6Q3KR16 790 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 TCERG1LQ5VWI1 586 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 TMEM215Q68D42 235 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 PM20D1Q6GTS8 502 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 METTL3Q86U44 580 aaKnown RBP16.85■□□□□ 0.29
COL7A1-204ENST00000462475 CACUL1Q86Y37 369 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 FAM217AQ8IXS0 508 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 FOXJ1Q92949 421 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 PLD4Q96BZ4 506 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 FAM124BQ9H5Z6 455 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-204ENST00000462475 DNAAF2Q9NVR5 837 aaKnown RBP16.85■□□□□ 0.29
COL7A1-204ENST00000462475 ELOVL2Q9NXB9 296 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 WSB2Q9NYS7 404 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-204ENST00000462475 SUSD2Q9UGT4 822 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 KLK13Q9UKR3 277 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 TSPAN16Q9UKR8 245 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 ADAMTS9Q9P2N4 1935 aa16.85■□□□□ 0.29
COL7A1-204ENST00000462475 CEP192Q8TEP8 1941 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 MEI4A8MW99 385 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 XPO1O14980 1071 aaKnown RBP16.84■□□□□ 0.29
COL7A1-204ENST00000462475 NPC1O15118 1278 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 GJB3O75712 270 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 CYBBP04839 570 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 SYPP08247 313 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 PRCPP42785 496 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 COPAP53621 1224 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 BCAT1P54687 386 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 SLC8A3P57103 927 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 ADIGQ0VDE8 80 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 GRIK2Q13002 908 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 CUL2Q13617 745 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 EIF4HQ15056 248 aaKnown RBP16.84■□□□□ 0.29
COL7A1-204ENST00000462475 TRIP4Q15650 581 aaPredicted RBP16.84■□□□□ 0.29
COL7A1-204ENST00000462475 WDR45BQ5MNZ6 344 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 SYCP2LQ5T4T6 812 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 TMPRSS6Q8IU80 811 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 FMNL3Q8IVF7 1028 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 ZC3H3Q8IXZ2 948 aaKnown RBP16.84■□□□□ 0.29
COL7A1-204ENST00000462475 DDI1Q8WTU0 396 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 UCMAQ8WVF2 138 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 CAMK1GQ96NX5 476 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 GPR174Q9BXC1 333 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 CIPCQ9C0C6 399 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 NEUROG3Q9Y4Z2 214 aa16.84■□□□□ 0.29
COL7A1-204ENST00000462475 SLC16A3O15427 465 aaKnown RBP16.83■□□□□ 0.28
COL7A1-204ENST00000462475 SYNCRIPO60506 623 aaKnown RBP16.83■□□□□ 0.28
COL7A1-204ENST00000462475 TSPAN3O60637 253 aa16.83■□□□□ 0.28
COL7A1-204ENST00000462475 NCAM1P13591 858 aa16.83■□□□□ 0.28
COL7A1-204ENST00000462475 CD19P15391 556 aa16.83■□□□□ 0.28
COL7A1-204ENST00000462475 GNSP15586 552 aa16.83■□□□□ 0.28
COL7A1-204ENST00000462475 HOXD9P28356 352 aaPredicted RBP16.83■□□□□ 0.28
COL7A1-204ENST00000462475 TPMTP51580 245 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms