RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 KLRC2P26717 231 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 CHRNB3Q05901 458 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 FIGNQ5HY92 759 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 PPP1R10Q96QC0 940 aaKnown RBP17.63■□□□□ 0.41
PTPRF-209ENST00000438120 MTG1Q9BT17 334 aaPredicted RBP17.63■□□□□ 0.41
PTPRF-209ENST00000438120 MAN1C1Q9NR34 630 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 LNPEPQ9UIQ6 1025 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 KCNK1O00180 336 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 AGRPO00253 132 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 ACADMP11310 421 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 VCLP18206 1134 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 TRIM69Q86WT6 500 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 TADA1Q96BN2 335 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 KIAA1683Q9H0B3 1180 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 ATP13A1Q9HD20 1204 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 INTS13Q9NVM9 706 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 CTNNAL1Q9UBT7 734 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 CYP7B1O75881 506 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 SLC2A4P14672 509 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 MAPK9P45984 424 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 CCNG1P51959 295 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 RASA2Q15283 850 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 FAR2Q96K12 515 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 DCLK3Q9C098 648 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 SOX13Q9UN79 622 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 NAALADL1Q9UQQ1 740 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 A0A087X0B3 334 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 PYGMP11217 842 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 SLC27A1Q6PCB7 646 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 OSBPL10Q9BXB5 764 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.63■□□□□ 0.417e-6■■■■□ 23.8
PTPRF-209ENST00000438120 RGS5O15539 181 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 RAMP2O60895 175 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 SH3BGRLO75368 114 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 NQO1P15559 274 aaKnown RBP17.62■□□□□ 0.41
PTPRF-209ENST00000438120 NR6A1Q15406 480 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 NFE2Q16621 373 aaPredicted RBP17.62■□□□□ 0.41
PTPRF-209ENST00000438120 SLC39A12Q504Y0 691 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 AGKQ53H12 422 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 RINLQ6ZS11 566 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 KRT84Q9NSB2 600 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 NDUFB5O43674 189 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 GRK3P35626 688 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 CBWD3Q5JTY5 395 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 CBWD5Q5RIA9 395 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 LRRC8DQ7L1W4 858 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 CDCA5Q96FF9 252 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 NRXN1Q9ULB1 1477 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 ANKRD63C9JTQ0 380 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 MAP3K13O43283 966 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 RBP1P09455 135 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 ZCCHC18P0CG32 403 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 BOP1Q14137 746 aaKnown RBP17.62■□□□□ 0.41
PTPRF-209ENST00000438120 N4BP2L1Q5TBK1 243 aaPredicted RBP17.62■□□□□ 0.41
PTPRF-209ENST00000438120 DEFB106AQ8N104 65 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 C3orf20Q8ND61 904 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 TDRKHQ9Y2W6 561 aaKnown RBP17.62■□□□□ 0.41
PTPRF-209ENST00000438120 A0A0A6YYK5 440 aaPredicted RBP17.62■□□□□ 0.41
PTPRF-209ENST00000438120 USP17L7P0C7H9 530 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 CSTF3Q12996 717 aaKnown RBP17.62■□□□□ 0.41
PTPRF-209ENST00000438120 CYB5D1Q6P9G0 228 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 XPNPEP3Q9NQH7 507 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 TBC1D23Q9NUY8 699 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 TBC1D13Q9NVG8 400 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 IPPQ9Y573 584 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 MAPK1P28482 360 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 MGAT5Q09328 741 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 CASP10Q92851 521 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 NCKIPSDQ9NZQ3 722 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 TRPC4Q9UBN4 977 aa17.62■□□□□ 0.41
PTPRF-209ENST00000438120 SCAMP3O14828 347 aaKnown RBP17.61■□□□□ 0.41
PTPRF-209ENST00000438120 SSTR1P30872 391 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 C1QBPQ07021 282 aaKnown RBP17.61■□□□□ 0.41
PTPRF-209ENST00000438120 BTG3Q14201 252 aaPredicted RBP17.61■□□□□ 0.41
PTPRF-209ENST00000438120 WDR93Q6P2C0 686 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 FAM180AQ6UWF9 173 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 ZSCAN32Q9NX65 697 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 REREQ9P2R6 1566 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 ERVK-10P10266 1014 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 PRLRP16471 622 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 YWHAZP63104 245 aaKnown RBP17.61■□□□□ 0.41
PTPRF-209ENST00000438120 TRAF2Q12933 501 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 NKRFO15226 690 aaKnown RBP eCLIP17.61■□□□□ 0.412e-6■■□□□ 14.2
PTPRF-209ENST00000438120 RRM2P31350 389 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 LGI2Q8N0V4 545 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 SERPINF2P08697 491 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 HPGDP15428 266 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 MSH3P20585 1137 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 BDNFP23560 247 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 ITGA9Q13797 1035 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 USP6NLQ92738 828 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 NAT9Q9BTE0 207 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 WTIPA6NIX2 430 aaPredicted RBP17.61■□□□□ 0.41
PTPRF-209ENST00000438120 LTFP02788 710 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 HNRNPH1P31943 449 aaKnown RBP17.61■□□□□ 0.41
PTPRF-209ENST00000438120 SAMD3Q8N6K7 520 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 SERAC1Q96JX3 654 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 ROGDIQ9GZN7 287 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 IGFLR1Q9H665 355 aa17.61■□□□□ 0.41
PTPRF-209ENST00000438120 ADAMTS13Q76LX8 1427 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms