RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 RNF208Q9H0X6 261 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 RTTNQ86VV8 2226 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 XRN1Q8IZH2 1706 aaKnown RBP12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 COL5A2P05997 1499 aaPredicted RBP12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 ZNF23P17027 643 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 MAP1SQ66K74 1059 aaPredicted RBP12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 TMEM159Q96B96 161 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 FRMD8Q9BZ67 464 aaPredicted RBP12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 MED24O75448 989 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 USP1O94782 785 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 FAM131BQ86XD5 332 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 ADAM32Q8TC27 787 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 OMDQ99983 421 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 CPA2P48052 419 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 BARX2Q9UMQ3 279 aaPredicted RBP12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 ROBO1Q9Y6N7 1651 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 NBNO60934 754 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 FYNP06241 537 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 GHRP10912 638 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 ATP6V1B2P21281 511 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 USP39Q53GS9 565 aaKnown RBP12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 DDX42Q86XP3 938 aaKnown RBP eCLIP12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 AGGF1Q8N302 714 aaeCLIP12.37□□□□□ -0.433e-6■□□□□ 11.3
CCDC88A-207ENST00000436346 TPD52L3Q96J77 140 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 MRPL9Q9BYD2 267 aaKnown RBP12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 NCAM2O15394 837 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 FNTAP49354 379 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 POM121L1PQ3SYA9 428 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 EXD1Q8NHP7 514 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 FRMD8P1Q9BZ68 369 aaPredicted RBP12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 NCKAP1Q9Y2A7 1128 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 TRIM17Q9Y577 477 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 MYPNQ86TC9 1320 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 ELAVL2Q12926 359 aaKnown RBP12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 KYNUQ16719 465 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 Q4G0T1 1027 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 EPS8L3Q8TE67 593 aaKnown RBP12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 TMEM176AQ96HP8 235 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 GMCL1Q96IK5 515 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 ZNF711Q9Y462 761 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 TFE3P19532 575 aaPredicted RBP12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 HALP42357 657 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 ANTXR2P58335 489 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 PKN2Q16513 984 aaKnown RBP12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 P3H2Q8IVL5 708 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 PPP1R10Q96QC0 940 aaKnown RBP12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 CCDC134Q9H6E4 229 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 DRG1Q9Y295 367 aaKnown RBP12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 INSRRP14616 1297 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 LSP1P33241 339 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 DEFA1P59665 94 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 DEFA3P59666 94 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 SKP1P63208 163 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 PTAR1Q7Z6K3 402 aaPredicted RBP12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 SPACA7Q96KW9 195 aa12.37□□□□□ -0.43
CCDC88A-207ENST00000436346 FOXN3O00409 490 aaPredicted RBP12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 STIP1P31948 543 aaKnown RBP12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 DSG3P32926 999 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 MYL6P60660 151 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 WLSQ5T9L3 541 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 AGBL2Q5U5Z8 902 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 CCDC103Q8IW40 242 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 DAGLBQ8NCG7 672 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 FBXO36Q8NEA4 188 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 CELF6Q96J87 481 aaKnown RBP12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 SEC16BQ96JE7 1060 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 XPO6Q96QU8 1125 aaKnown RBP12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 FDXACB1Q9BRP7 624 aaPredicted RBP12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 TBC1D13Q9NVG8 400 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 SAE1Q9UBE0 346 aaPredicted RBP12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 KNDC1Q76NI1 1749 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 CEP290O15078 2479 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 CCNT2O60583 730 aaKnown RBP12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 TRIM71Q2Q1W2 868 aaKnown RBP12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 PNMA5Q96PV4 448 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 TBC1D23Q9NUY8 699 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 UXTQ9UBK9 157 aaPredicted RBP12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 TFR2Q9UP52 801 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 F8VZ95 297 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 CPSF4O95639 269 aaKnown RBP12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 CYP11B2P19099 503 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 PEX5P50542 639 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 TRAF2Q12933 501 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 SLC29A2Q14542 456 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 SLC39A12Q504Y0 691 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 EIF3HO15372 352 aaKnown RBP eCLIP12.36□□□□□ -0.433e-6■■□□□ 13.8
CCDC88A-207ENST00000436346 RAMP2O60895 175 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 ARP10275 920 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 VDRP11473 427 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 HERVK_113P62684 666 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 HLA-DQA1Q5Y7H0 255 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 METTL7BQ6UX53 244 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 LPCAT1Q8NF37 534 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 AKAP7Q9P0M2 348 aaPredicted RBP12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 ADM5C9JUS6 153 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 POU1F1P28069 291 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 MLH1P40692 756 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 TUBP50607 506 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 OTUD4Q01804 1114 aaKnown RBP12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 TRAF7Q6Q0C0 670 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms