RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 GREB1LQ9C091 1923 aaPredicted RBP4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 NID2Q14112 1375 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 CCDC196A0A1B0GTZ2 297 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 CCDC151A5D8V7 595 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 ADM5C9JUS6 153 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 E9PLN8 166 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 F5H697 171 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 MPPED1O15442 326 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 JAK2O60674 1132 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 DTNBO60941 627 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 VPS4BO75351 444 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 PRDM1O75626 825 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 TSPY3P0CV98 308 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 TSPY8P0CW00 308 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 CALM1P0DP23 149 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 CALM2P0DP24 149 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 CALM3P0DP25 149 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 CYP2D6P10635 497 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 CHRM3P20309 590 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 PDIA3P30101 505 aaKnown RBP4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 CYP2C19P33261 490 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 GRIA3P42263 894 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 LIFRP42702 1097 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 KRT85P78386 507 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 AKAP17AQ02040 695 aaKnown RBP4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 DSC2Q02487 901 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 TRIM29Q14134 588 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 C12orf60Q5U649 245 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 APOA5Q6Q788 366 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 CATIPQ7Z7H3 387 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 ZNF444Q8N0Y2 327 aaPredicted RBP4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 TMTC2Q8N394 836 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 FBXL16Q8N461 479 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 CERS5Q8N5B7 392 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 SH2D3CQ8N5H7 860 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 C3orf20Q8ND61 904 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 CTCFLQ8NI51 663 aaPredicted RBP4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 SCAMP4Q969E2 229 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 LRIG1Q96JA1 1093 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 UROC1Q96N76 676 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 PSMD1Q99460 953 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 VKORC1Q9BQB6 163 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 MXD3Q9BW11 206 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 C1orf43Q9BWL3 253 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 TPSD1Q9BZJ3 242 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 TAOK3Q9H2K8 898 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 LY9Q9HBG7 655 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 ORC3Q9UBD5 711 aaPredicted RBP4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 TNFRSF18Q9Y5U5 241 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 EP400Q96L91 3159 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 COL4A5P29400 1685 aa4.31□□□□□ -1.72
HMGB3P20-201ENST00000417997 STK36Q9NRP7 1315 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 A0A0B4J269 797 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 FIBPO43427 364 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 IL33O95760 270 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 MBD3O95983 291 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 RXRAP19793 462 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 GPD1P21695 349 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 RECQLP46063 649 aaPredicted RBP4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 PIK3CGP48736 1102 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 RCAN1P53805 252 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 EVCP57679 992 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 RHBDL3P58872 404 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 POU6F2P78424 691 aaPredicted RBP4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 TFAP4Q01664 338 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 ITIH3Q06033 890 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 TUBB3Q13509 450 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 HLXQ14774 488 aaPredicted RBP4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 FAM153CQ494X1 144 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 CCDC157Q569K6 752 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 THEMIS2Q5TEJ8 643 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 AMIGO2Q86SJ2 522 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 PDSS2Q86YH6 399 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 JDP2Q8WYK2 163 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 WASF1Q92558 559 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 RGMAQ96B86 450 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 DYNLL2Q96FJ2 89 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 C8orf76Q96K31 380 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 SLC26A6Q9BXS9 759 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 SLC13A1Q9BZW2 595 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 VPS33BQ9H267 617 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 SMOC2Q9H3U7 446 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 KAT14Q9H8E8 782 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 PCDH12Q9NPG4 1184 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 RBM28Q9NW13 759 aaKnown RBP4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 SWAP70Q9UH65 585 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 MTMR6Q9Y217 621 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 POLHQ9Y253 713 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 DDX49Q9Y6V7 483 aaKnown RBP4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 DOCK1Q14185 1865 aa4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 COL2A1P02458 1487 aaPredicted RBP4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 RBBP6Q7Z6E9 1792 aaKnown RBP4.3□□□□□ -1.72
HMGB3P20-201ENST00000417997 PLIN4Q96Q06 1357 aa4.29□□□□□ -1.72
HMGB3P20-201ENST00000417997 SBF1O95248 1867 aa4.29□□□□□ -1.72
HMGB3P20-201ENST00000417997 LINC00473A8K010 186 aa4.29□□□□□ -1.72
HMGB3P20-201ENST00000417997 YDJCA8MPS7 323 aa4.29□□□□□ -1.72
HMGB3P20-201ENST00000417997 NT5C1B-RDH14C9J2C7 533 aa4.29□□□□□ -1.72
HMGB3P20-201ENST00000417997 MPHOSPH10O00566 681 aaKnown RBP4.29□□□□□ -1.72
HMGB3P20-201ENST00000417997 PROM1O43490 865 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms