RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 NR1H2P55055 460 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 CSE1LP55060 971 aaKnown RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 COX10Q12887 443 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 MTF1Q14872 753 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 FAM187BQ17R55 369 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 ZRANB3Q5FWF4 1079 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 PAGE2BQ5JRK9 111 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 EPHA10Q5JZY3 1008 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 GJC2Q5T442 439 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 RETSATQ6NUM9 610 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 BHLHB9Q6PI77 547 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 ARHGAP22Q7Z5H3 698 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 IPMKQ8NFU5 416 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 PABPC5Q96DU9 382 aaKnown RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 CDC42EP4Q9H3Q1 356 aaKnown RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 C6orf203Q9P0P8 240 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 STON1Q9Y6Q2 735 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 ALKQ9UM73 1620 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 NPR3P17342 541 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 RASA1P20936 1047 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 HPCAL1P37235 193 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 TBL3Q12788 808 aaKnown RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 PTPAQ15257 358 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 OASLQ15646 514 aaKnown RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 COBLL1Q53SF7 1204 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 B3GNT6Q6ZMB0 384 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 SH3BP5LQ7L8J4 393 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 DNAJB7Q7Z6W7 309 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 EXOC3L1Q86VI1 746 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 CCDC36Q8IYA8 594 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 TDRD5Q8NAT2 981 aaKnown RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 KLHL25Q9H0H3 589 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 TDRD3Q9H7E2 651 aaKnown RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 ENTPD7Q9NQZ7 604 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 METTL5Q9NRN9 209 aaKnown RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 SALL1Q9NSC2 1324 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 TRAFD1O14545 582 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 CHADO15335 359 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 RGS14O43566 566 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 DNAJA2O60884 412 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 ASTN2O75129 1339 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 CYP11B1P15538 503 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 EIF4BP23588 611 aaKnown RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 AKAP5P24588 427 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 CACNA2D1P54289 1103 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 FKBP1AP62942 108 aaKnown RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 ENPEPQ07075 957 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 TRAF3Q13114 568 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 TCEA2Q15560 299 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 TBCELQ5QJ74 424 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 CHMP1BQ7LBR1 199 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 MIER2Q8N344 545 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 CCDC24Q8N4L8 307 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 MYDGFQ969H8 173 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 PTCD3Q96EY7 689 aaKnown RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 AGXT2Q9BYV1 514 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 PLGRKTQ9HBL7 147 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 ZFYVE28Q9HCC9 887 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 DPP3Q9NY33 737 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 DNAJC5BQ9UF47 199 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 DNAJC16Q9Y2G8 782 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 SPHKAPQ2M3C7 1700 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 BBIP1A8MTZ0 92 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 ZNF185O15231 689 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 FGF10O15520 208 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-203ENST00000409050 CYP2A6P11509 494 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-203ENST00000409050 ZNF24P17028 368 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 EPHB2P29323 1055 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 PRKCIP41743 596 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 DLG4P78352 724 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 OLR1P78380 273 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 TNK2Q07912 1038 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 ST3GAL1Q11201 340 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 TRAP1Q12931 704 aaKnown RBP6.25□□□□□ -1.41
SCN1A-203ENST00000409050 LLGL1Q15334 1064 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 Q3C1V9 767 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 EEPD1Q7L9B9 569 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 ABRAQ8N0Z2 381 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 ZCCHC9Q8N567 271 aaKnown RBP6.25□□□□□ -1.41
SCN1A-203ENST00000409050 FAM71DQ8N9W8 422 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 ZFP28Q8NHY6 868 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 ZNF184Q99676 751 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-203ENST00000409050 TRMOQ9BU70 441 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 DPY30Q9C005 99 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 RUVBL2Q9Y230 463 aaKnown RBP6.25□□□□□ -1.41
SCN1A-203ENST00000409050 LZTS1Q9Y250 596 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 PCDHGC5Q9Y5F6 944 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 TAF4O00268 1085 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 RIPK2O43353 540 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 RTN3O95197 1032 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-203ENST00000409050 UBTFL6P0CB48 400 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-203ENST00000409050 ADSLP30566 484 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-203ENST00000409050 C21orf59P57076 290 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 PPIDQ08752 370 aaKnown RBP6.25□□□□□ -1.41
SCN1A-203ENST00000409050 CYP4A22Q5TCH4 519 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 TXNDC11Q6PKC3 985 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 STOX1Q6ZVD7 989 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 KATNAL2Q8IYT4 538 aa6.25□□□□□ -1.41
SCN1A-203ENST00000409050 NKAPQ8N5F7 415 aaKnown RBP6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms