RNA–Protein interactions for RNA: ENST00000404354.3

SMC1B-202, Transcript of structural maintenance of chromosomes 1B, humanhuman

TSL 1 (best) BASIC

Gene SMC1B, Length 3,636 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1B-202ENST00000404354 TFAP2AP05549 437 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 PABPC4LP0CB38 370 aaKnown RBP9.88□□□□□ -0.83
SMC1B-202ENST00000404354 SRGAP2BP0DMP2 458 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 ERVK-10P10266 1014 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 TCF7P36402 384 aaPredicted RBP9.88□□□□□ -0.83
SMC1B-202ENST00000404354 MLH1P40692 756 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 IDH3AP50213 366 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 GBE1Q04446 702 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 KCNJ11Q14654 390 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 LRRC38Q5VT99 294 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 TMEM198Q66K66 360 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 FAM160B2Q86V87 743 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 C12orf29Q8N999 325 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 MCPH1Q8NEM0 835 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 RXFP2Q8WXD0 754 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 HSPBAP1Q96EW2 488 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 DCUN1D1Q96GG9 259 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 HEXIM2Q96MH2 286 aaKnown RBP9.88□□□□□ -0.83
SMC1B-202ENST00000404354 AGAP3Q96P47 875 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 LENG8Q96PV6 779 aaPredicted RBP9.88□□□□□ -0.83
SMC1B-202ENST00000404354 CDRT15Q96T59 188 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 CGRRF1Q99675 332 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 DHX35Q9H5Z1 703 aaKnown RBP9.88□□□□□ -0.83
SMC1B-202ENST00000404354 CAB39LQ9H9S4 337 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 PPCSQ9HAB8 311 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 JPH1Q9HDC5 661 aaPredicted RBP9.88□□□□□ -0.83
SMC1B-202ENST00000404354 THAP1Q9NVV9 213 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 USP21Q9UK80 565 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 NRAPQ86VF7 1730 aa9.88□□□□□ -0.83
SMC1B-202ENST00000404354 YDJCA8MPS7 323 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 VILLO15195 856 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 PRPSAP2O60256 369 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 ASS1P00966 412 aaKnown RBP9.87□□□□□ -0.83
SMC1B-202ENST00000404354 NPR1P16066 1061 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 SOX11P35716 441 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 SNRPFP62306 86 aaKnown RBP9.87□□□□□ -0.83
SMC1B-202ENST00000404354 MYLK3Q32MK0 819 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 ANKRD20A4Q4UJ75 823 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 PABPC1LQ4VXU2 614 aaKnown RBP9.87□□□□□ -0.83
SMC1B-202ENST00000404354 ANGEL2Q5VTE6 544 aaKnown RBP9.87□□□□□ -0.83
SMC1B-202ENST00000404354 TMIGD2Q96BF3 282 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 LENG1Q96BZ8 264 aaPredicted RBP9.87□□□□□ -0.83
SMC1B-202ENST00000404354 RNF146Q9NTX7 359 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 FAM49BQ9NUQ9 324 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 ZNF70Q9UC06 446 aaPredicted RBP9.87□□□□□ -0.83
SMC1B-202ENST00000404354 MRPL42Q9Y6G3 142 aaKnown RBP9.87□□□□□ -0.83
SMC1B-202ENST00000404354 COL5A3P25940 1745 aaPredicted RBP9.87□□□□□ -0.83
SMC1B-202ENST00000404354 LYPLA2O95372 231 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 TRUB2O95900 331 aaKnown RBP9.87□□□□□ -0.83
SMC1B-202ENST00000404354 TFE3P19532 575 aaPredicted RBP9.87□□□□□ -0.83
SMC1B-202ENST00000404354 TYK2P29597 1187 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 FDFT1P37268 417 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 SP2Q02086 613 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 SLC9B1Q4ZJI4 515 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 UGT2A3Q6UWM9 527 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 LCA5Q86VQ0 697 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 MCF2L2Q86YR7 1114 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 ZNF781Q8N8C0 355 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 MAPK15Q8TD08 544 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 CNKSR2Q8WXI2 1034 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 LRGUKQ96M69 825 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 OR52B2Q96RD2 323 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 NIF3L1Q9GZT8 377 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 USP29Q9HBJ7 922 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 HES2Q9Y543 173 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 WNK3Q9BYP7 1800 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 RGS20O76081 388 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 EPHA3P29320 983 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 ALDH1B1P30837 517 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 POLR2BP30876 1174 aaKnown RBP9.87□□□□□ -0.83
SMC1B-202ENST00000404354 SFNP31947 248 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 PTGER2P43116 358 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 PDE1CQ14123 709 aaPredicted RBP9.87□□□□□ -0.83
SMC1B-202ENST00000404354 TRNP1Q6NT89 227 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 PQLC3Q8N755 202 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 PLD5Q8N7P1 536 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 GSDMBQ8TAX9 411 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 SLC7A3Q8WY07 619 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 ITFG2Q969R8 447 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 TMA16Q96EY4 203 aaKnown RBP9.87□□□□□ -0.83
SMC1B-202ENST00000404354 HAPLN3Q96S86 360 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 LPIN3Q9BQK8 851 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 B3GNT5Q9BYG0 378 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 CHCHD3Q9NX63 227 aaKnown RBP9.87□□□□□ -0.83
SMC1B-202ENST00000404354 SH3BP1Q9Y3L3 701 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 AP4B1Q9Y6B7 739 aa9.87□□□□□ -0.83
SMC1B-202ENST00000404354 DKC1O60832 514 aaKnown RBP eCLIP9.86□□□□□ -0.83
SMC1B-202ENST00000404354 ATP6V1G1O75348 118 aa9.86□□□□□ -0.83
SMC1B-202ENST00000404354 ENTPD3O75355 529 aa9.86□□□□□ -0.83
SMC1B-202ENST00000404354 PSAPP07602 524 aa9.86□□□□□ -0.83
SMC1B-202ENST00000404354 FGF3P11487 239 aaPredicted RBP9.86□□□□□ -0.83
SMC1B-202ENST00000404354 ARSAP15289 507 aa9.86□□□□□ -0.83
SMC1B-202ENST00000404354 XRCC1P18887 633 aaPredicted RBP9.86□□□□□ -0.83
SMC1B-202ENST00000404354 TGFB2P61812 414 aa9.86□□□□□ -0.83
SMC1B-202ENST00000404354 TUBB3Q13509 450 aa9.86□□□□□ -0.83
SMC1B-202ENST00000404354 SNX32Q86XE0 403 aa9.86□□□□□ -0.83
SMC1B-202ENST00000404354 TRIM50Q86XT4 487 aa9.86□□□□□ -0.83
SMC1B-202ENST00000404354 XYLT1Q86Y38 959 aa9.86□□□□□ -0.83
SMC1B-202ENST00000404354 MAP7D3Q8IWC1 876 aa9.86□□□□□ -0.83
SMC1B-202ENST00000404354 TRIM42Q8IWZ5 723 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms