RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 CENPKQ9BS16 269 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 PDGFCQ9NRA1 345 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 CREBZFQ9NS37 354 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 EPHB3P54753 998 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 GLRA4Q5JXX5 417 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 RNF157Q96PX1 679 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 HNRNPABQ99729 332 aaKnown RBP3.49□□□□□ -1.85
VPS13C-203ENST00000395896 FAM167BQ9BTA0 163 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 BCO2Q9BYV7 579 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 ARHGAP39Q9C0H5 1083 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 DYTNA2CJ06 578 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 DNALI1O14645 258 aaPredicted RBP3.49□□□□□ -1.85
VPS13C-203ENST00000395896 MAP2K7O14733 419 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 CST5P28325 142 aaPredicted RBP3.49□□□□□ -1.85
VPS13C-203ENST00000395896 LRPAP1P30533 357 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 MRPS5P82675 430 aaKnown RBP3.49□□□□□ -1.85
VPS13C-203ENST00000395896 OTUD4Q01804 1114 aaKnown RBP3.49□□□□□ -1.85
VPS13C-203ENST00000395896 UGCGQ16739 394 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 NOMO2Q5JPE7 1267 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 SCARA3Q6AZY7 606 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 PIGZQ86VD9 579 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 CEP57Q86XR8 500 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 BTN2A3PQ96KV6 586 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 PACSIN1Q9BY11 444 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 DYRK4Q9NR20 520 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 GDF3Q9NR23 364 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 CORO1CQ9ULV4 474 aaPredicted RBP3.49□□□□□ -1.85
VPS13C-203ENST00000395896 ARL2BPQ9Y2Y0 163 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 HEATR5BQ9P2D3 2071 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 SELPP16109 830 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 ADIGQ0VDE8 80 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 MGAT5BQ3V5L5 792 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 MON1BQ7L1V2 547 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 SCUBE3Q8IX30 993 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 C1orf54Q8WWF1 131 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 SNX27Q96L92 541 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 TMEM109Q9BVC6 243 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 POLR1EQ9GZS1 481 aaKnown RBP3.49□□□□□ -1.85
VPS13C-203ENST00000395896 UPF3AQ9H1J1 476 aaKnown RBP3.49□□□□□ -1.85
VPS13C-203ENST00000395896 TXNRD2Q9NNW7 524 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 EIF2B3Q9NR50 452 aaKnown RBP3.49□□□□□ -1.85
VPS13C-203ENST00000395896 COMMD8Q9NX08 183 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 CNTN3Q9P232 1028 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 PLXNB2O15031 1838 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 E5RI56 91 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 ZNF185O15231 689 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 TSPAN1O60635 241 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 TRPA1O75762 1119 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 EPOP01588 193 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 POLD2P49005 469 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 NPY2RP49146 381 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 PURAQ00577 322 aaKnown RBP3.49□□□□□ -1.85
VPS13C-203ENST00000395896 TMED2Q15363 201 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 TTC31Q49AM3 519 aaPredicted RBP3.49□□□□□ -1.85
VPS13C-203ENST00000395896 CASKIN2Q8WXE0 1202 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 TATDN2Q93075 761 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 ASIC4Q96FT7 647 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 C16orf70Q9BSU1 422 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 GPR88Q9GZN0 384 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 KDM4CQ9H3R0 1056 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 SMARCAL1Q9NZC9 954 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.49□□□□□ -1.851e-10■■■■■ 32.8
VPS13C-203ENST00000395896 TBC1D14Q9P2M4 693 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 SH3BP1Q9Y3L3 701 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 SYNJ2BP-COX16A0A087WUM0 186 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 H3BMM5 538 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 IRAK2O43187 625 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 TCEA3O75764 348 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 GHRP10912 638 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 LCP1P13796 627 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 ITGA8P53708 1063 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 GSCP56915 257 aaPredicted RBP3.49□□□□□ -1.85
VPS13C-203ENST00000395896 DLG4P78352 724 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 DMTNQ08495 405 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 CCDC153Q494R4 210 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 RTL10Q7L3V2 364 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 KSR1Q8IVT5 923 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 PIDD1Q9HB75 910 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 METTL5Q9NRN9 209 aaKnown RBP3.49□□□□□ -1.85
VPS13C-203ENST00000395896 KRT82Q9NSB4 513 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 COX16Q9P0S2 106 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 ARID2Q68CP9 1835 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 BCLAF3A2AJT9 711 aaKnown RBP3.49□□□□□ -1.85
VPS13C-203ENST00000395896 HEATR9A2RTY3 570 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 GOLGA8TH3BQL2 631 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 MEFVO15553 781 aaPredicted RBP3.49□□□□□ -1.85
VPS13C-203ENST00000395896 RBP1P09455 135 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 IFT88Q13099 833 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 ACAD11Q709F0 780 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 NUDCD3Q8IVD9 361 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 RAB42Q8N4Z0 105 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 SLC20A1Q8WUM9 679 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 ACDQ96AP0 544 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 PABPC5Q96DU9 382 aaKnown RBP3.49□□□□□ -1.85
VPS13C-203ENST00000395896 STAMBPL1Q96FJ0 436 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 MS4A14Q96JA4 679 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 CCT8L2Q96SF2 557 aa3.49□□□□□ -1.85
VPS13C-203ENST00000395896 MMADHCQ9H3L0 296 aaPredicted RBP3.49□□□□□ -1.85
VPS13C-203ENST00000395896 CDC42EP4Q9H3Q1 356 aaKnown RBP3.49□□□□□ -1.85
VPS13C-203ENST00000395896 SEPT3Q9UH03 358 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms