RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 MED11Q9P086 117 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 VPS51Q9UID3 782 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 SSR3Q9UNL2 185 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 MOCS2O96007 188 aaPredicted RBP13.74□□□□□ -0.21
USP49-203ENST00000394253 PRH1P02810 166 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 PDGFRBP09619 1106 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 RPS2P15880 293 aaKnown RBP13.74□□□□□ -0.21
USP49-203ENST00000394253 AQP5P55064 265 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 ILF3Q12906 894 aaKnown RBP eCLIP13.74□□□□□ -0.21
USP49-203ENST00000394253 PDPK2PQ6A1A2 396 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 IL31Q6EBC2 164 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 FAM49AQ9H0Q0 323 aaPredicted RBP13.74□□□□□ -0.21
USP49-203ENST00000394253 UBQLN1Q9UMX0 589 aaKnown RBP13.74□□□□□ -0.21
USP49-203ENST00000394253 ITIH6Q6UXX5 1313 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 STIP1P31948 543 aaKnown RBP13.74□□□□□ -0.21
USP49-203ENST00000394253 FAPQ12884 760 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 ARID5BQ14865 1188 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 FGD3Q5JSP0 725 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 SLC9A4Q6AI14 798 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 RAD54LQ92698 747 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 NLNQ9BYT8 704 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 MAST1Q9Y2H9 1570 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 PARNO95453 639 aaKnown RBP13.74□□□□□ -0.21
USP49-203ENST00000394253 SLC2A3P11169 496 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 FSTL5Q8N475 847 aaPredicted RBP13.74□□□□□ -0.21
USP49-203ENST00000394253 SPPL2AQ8TCT8 520 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 SPIRE2Q8WWL2 714 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 SERAC1Q96JX3 654 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 UNKQ9C0B0 810 aaKnown RBP13.74□□□□□ -0.21
USP49-203ENST00000394253 STK32BQ9NY57 414 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 MAGEB3O15480 346 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 ADSLP30566 484 aaPredicted RBP13.74□□□□□ -0.21
USP49-203ENST00000394253 NR1H2P55055 460 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 BTBD10Q9BSF8 475 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 MED28Q9H204 178 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 CCDC86Q9H6F5 360 aaKnown RBP13.74□□□□□ -0.21
USP49-203ENST00000394253 DYRK1BQ9Y463 629 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 RAPGEF6Q8TEU7 1601 aa13.74□□□□□ -0.21
USP49-203ENST00000394253 PVALEFA0A1B0GWK0 134 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 SSU72P8A0A1W2PR75 194 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 RLN1P04808 185 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 HSD17B3P37058 310 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 GUF1Q8N442 669 aaKnown RBP13.73□□□□□ -0.21
USP49-203ENST00000394253 TTYH1Q9H313 450 aaPredicted RBP13.73□□□□□ -0.21
USP49-203ENST00000394253 RAB23Q9ULC3 237 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 TBC1D30Q9Y2I9 924 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 GRIP1Q9Y3R0 1128 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 SNRNP200O75643 2136 aaKnown RBP13.73□□□□□ -0.21
USP49-203ENST00000394253 MAGEA12P43365 314 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 ITGA8P53708 1063 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 TMED8Q6PL24 325 aaPredicted RBP13.73□□□□□ -0.21
USP49-203ENST00000394253 IPMKQ8NFU5 416 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 AIF1LQ9BQI0 150 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 COPRSQ9NQ92 184 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 ZNF232Q9UNY5 417 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 YEATS2Q9ULM3 1422 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 SH2B2O14492 632 aaPredicted RBP13.73□□□□□ -0.21
USP49-203ENST00000394253 CIAO1O76071 339 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 IL2P60568 153 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 FRG1Q14331 258 aaKnown RBP13.73□□□□□ -0.21
USP49-203ENST00000394253 PSMD5Q16401 504 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 TNFAIP8L1Q8WVP5 186 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 FAM20AQ96MK3 541 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 SEPHS2Q99611 448 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 PRDM5Q9NQX1 630 aaPredicted RBP13.73□□□□□ -0.21
USP49-203ENST00000394253 RPS6KA6Q9UK32 745 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 MAFFQ9ULX9 164 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 C2CD2Q9Y426 696 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 RPS6KL1Q9Y6S9 549 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 RNF123Q5XPI4 1314 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 CLASP1Q7Z460 1538 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 SDR42E2A6NKP2 422 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 TPBGLP0DKB5 382 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 HARS2P49590 506 aaKnown RBP13.73□□□□□ -0.21
USP49-203ENST00000394253 CDC42P60953 191 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 ZC2HC1CQ53FD0 456 aaPredicted RBP13.73□□□□□ -0.21
USP49-203ENST00000394253 CHERPQ8IWX8 916 aaKnown RBP13.73□□□□□ -0.21
USP49-203ENST00000394253 ITFG1Q8TB96 612 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 PRDM8Q9NQV8 689 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 SEC31BQ9NQW1 1179 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 UPB1Q9UBR1 384 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 CDH7Q9ULB5 785 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 PCDHB6Q9Y5E3 794 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 PRAG1Q86YV5 1406 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 ARPC4-TTLL3A0A0A6YYG9 625 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 IFNA6P05013 189 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 ATP4AP20648 1035 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 ENPEPQ07075 957 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 KCNMA1Q12791 1236 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 TFDP3Q5H9I0 405 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 PPM1LQ5SGD2 360 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 GPALPP1Q8IXQ4 340 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 PM20D2Q8IYS1 436 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 OR8H3Q8N146 312 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 ZNF655Q8N720 491 aaPredicted RBP13.73□□□□□ -0.21
USP49-203ENST00000394253 FAM118BQ9BPY3 351 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 GGA3Q9NZ52 723 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 PLEKHG1Q9ULL1 1385 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 EDC4Q6P2E9 1401 aaKnown RBP13.73□□□□□ -0.21
USP49-203ENST00000394253 MYO5CQ9NQX4 1742 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms