RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 MBD3L2Q8NHZ7 208 aaPredicted RBP2.6□□□□□ -1.99
VPS13A-206ENST00000376646 PIGKQ92643 395 aa2.6□□□□□ -1.99
VPS13A-206ENST00000376646 ZNF668Q96K58 619 aaPredicted RBP2.6□□□□□ -1.99
VPS13A-206ENST00000376646 FAM227BQ96M60 508 aa2.6□□□□□ -1.99
VPS13A-206ENST00000376646 HEYLQ9NQ87 328 aaPredicted RBP2.6□□□□□ -1.99
VPS13A-206ENST00000376646 ABHD10Q9NUJ1 306 aa2.6□□□□□ -1.99
VPS13A-206ENST00000376646 TMEM45AQ9NWC5 275 aa2.6□□□□□ -1.99
VPS13A-206ENST00000376646 SEMA5BQ9P283 1151 aa2.6□□□□□ -1.99
VPS13A-206ENST00000376646 B4DGG1 531 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 FOXN3O00409 490 aaPredicted RBP2.59□□□□□ -1.99
VPS13A-206ENST00000376646 INMTO95050 263 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 TOMM40O96008 361 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 FGF2P09038 288 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 HOXB6P17509 224 aaKnown RBP2.59□□□□□ -1.99
VPS13A-206ENST00000376646 CLCA4Q14CN2 919 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 ACOX1Q15067 660 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 FAM110CQ1W6H9 321 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 KLHL22Q53GT1 634 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 TMEM196Q5HYL7 178 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 EARS2Q5JPH6 523 aaKnown RBP2.59□□□□□ -1.99
VPS13A-206ENST00000376646 SYCP2LQ5T4T6 812 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 NUGGCQ68CJ6 796 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 ZNF549Q6P9A3 640 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 CRELD2Q6UXH1 353 aaPredicted RBP2.59□□□□□ -1.99
VPS13A-206ENST00000376646 DEF8Q6ZN54 512 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 ARFGAP1Q8N6T3 406 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 ACRBPQ8NEB7 543 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 ASB5Q8WWX0 329 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 IQCDQ96DY2 449 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 ZDHHC12Q96GR4 267 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 ZFYVE19Q96K21 471 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 CINPQ9BW66 212 aaPredicted RBP2.59□□□□□ -1.99
VPS13A-206ENST00000376646 FAM234AQ9H0X4 552 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 CHST12Q9NRB3 414 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 ASNSD1Q9NWL6 643 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 FAM50BQ9Y247 325 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 POM121BA6NF01 834 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 RHPN2P1A8MT19 583 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 PQBP1O60828 265 aaKnown RBP2.59□□□□□ -1.99
VPS13A-206ENST00000376646 CCKARP32238 428 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 SRSF1Q07955 248 aaKnown RBP eCLIP2.59□□□□□ -1.99
VPS13A-206ENST00000376646 DAG1Q14118 895 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 COBLL1Q53SF7 1204 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 RAP1GAP2Q684P5 730 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 MZT2AQ6P582 158 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 RBM44Q6ZP01 1051 aaKnown RBP2.59□□□□□ -1.99
VPS13A-206ENST00000376646 KRT28Q7Z3Y7 464 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 CCDC33Q8N5R6 958 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 IPCEF1Q8WWN9 437 aaPredicted RBP2.59□□□□□ -1.99
VPS13A-206ENST00000376646 PHKBQ93100 1093 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 SLC25A28Q96A46 364 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 STRBPQ96SI9 672 aaKnown RBP2.59□□□□□ -1.99
VPS13A-206ENST00000376646 SARGQ9BW04 601 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 GATA5Q9BWX5 397 aaPredicted RBP2.59□□□□□ -1.99
VPS13A-206ENST00000376646 KRTAP2-2Q9BYT5 123 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 MSRB1Q9NZV6 116 aa2.59□□□□□ -1.99
VPS13A-206ENST00000376646 FAM90A10PA6NDY2 464 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 M0QZQ0 153 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 PLIN1O60240 522 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 UGDHO60701 494 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 IL18RAPO95256 599 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 NDST3O95803 873 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 TRIM27P14373 513 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 MST1P26927 711 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 NDUFS1P28331 727 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 RHBDL3P58872 404 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 UBE4AQ14139 1066 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 ELF2Q15723 593 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 ARHGAP15Q53QZ3 475 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 KYAT3Q6YP21 454 aaKnown RBP2.58□□□□□ -2
VPS13A-206ENST00000376646 MEPCEQ7L2J0 689 aaKnown RBP2.58□□□□□ -2
VPS13A-206ENST00000376646 MMP21Q8N119 569 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 WDR24Q96S15 920 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 AAMDCQ9H7C9 122 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 MOV10Q9HCE1 1003 aaKnown RBP2.58□□□□□ -2
VPS13A-206ENST00000376646 PNPLA8Q9NP80 782 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 MAFFQ9ULX9 164 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 ARID4BQ4LE39 1312 aaPredicted RBP2.58□□□□□ -2
VPS13A-206ENST00000376646 TMEM272A0A1B0GTI8 110 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 ZNF814B7Z6K7 855 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 APAF1O14727 1248 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 NDUFB8O95169 186 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 PEPDP12955 493 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 RPS6KB1P23443 525 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 THBS3P49746 956 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 AGTR2P50052 363 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 HSF1Q00613 529 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 ZNF543Q08ER8 600 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 KCNJ12Q14500 433 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 SAFBQ15424 915 aaKnown RBP eCLIP2.58□□□□□ -2
VPS13A-206ENST00000376646 CNGA3Q16281 694 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 FAM90A2PQ658T7 463 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 IL31Q6EBC2 164 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 C9orf47Q6ZRZ4 202 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 PIM3Q86V86 326 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 RFX6Q8HWS3 928 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 CCDC28AQ8IWP9 274 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 SDR16C5Q8N3Y7 309 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 PJA1Q8NG27 643 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 SPATA3Q8NHX4 192 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms