RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 FUBP3Q96I24 572 aaKnown RBP eCLIP13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 ZNF558Q96NG5 402 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 PGLYRP2Q96PD5 576 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 DCLK3Q9C098 648 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 HAUS2Q9NVX0 235 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 TCEA3O75764 348 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 GJB5O95377 273 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 VNN2O95498 520 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 ACSL3O95573 720 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 KRT1P04264 644 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 KCNA4P22459 653 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 YWHAZP63104 245 aaKnown RBP13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 CDO1Q16878 200 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 LONRF1Q17RB8 773 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 C15orf59Q2T9L4 293 aaPredicted RBP13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 USP41Q3LFD5 358 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 RAB41Q5JT25 222 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 SLC39A11Q8N1S5 342 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 CCDC89Q8N998 374 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 COLGALT1Q8NBJ5 622 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 CFAP57Q96MR6 1250 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 YME1L1Q96TA2 773 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 CRISPLD1Q9H336 500 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 NGRNQ9NPE2 291 aaKnown RBP13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 ABI2Q9NYB9 513 aaPredicted RBP13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 PCDHB5Q9Y5E4 795 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 CHD9Q3L8U1 2897 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 CFAP73A6NFT4 308 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 PRPSAP2O60256 369 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 CPB1P15086 417 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 RPL17P18621 184 aaKnown RBP13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 LAG3P18627 525 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 PTPN9P43378 593 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 IFNAR2P48551 515 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 ITGA8P53708 1063 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 ARPP19P56211 112 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 ATP11AP98196 1134 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 LMNB2Q03252 620 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 LLGL1Q15334 1064 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 CCNG2Q16589 344 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 CCDC14Q49A88 953 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 KIAA1841Q6NSI8 718 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 HFE2Q6ZVN8 426 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 BHLHA9Q7RTU4 235 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 TRPM8Q7Z2W7 1104 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 ANKS1BQ7Z6G8 1248 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 ATAD1Q8NBU5 361 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 ACSF2Q96CM8 615 aaPredicted RBP13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 TMEM169Q96HH4 297 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 ULBP1Q9BZM6 244 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 FOXP3Q9BZS1 431 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 CHST7Q9NS84 486 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 USP18Q9UMW8 372 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 GREB1Q4ZG55 1949 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 ZBED1O96006 694 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 IL1R2P27930 398 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 MIPP30301 263 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 SLC8A1P32418 973 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 MATKP42679 507 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 GPR15P49685 360 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 COPS2P61201 443 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 HTRA4P83105 476 aaPredicted RBP13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 SMARCB1Q12824 385 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 SPRED3Q2MJR0 410 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 SDHAF4Q5VUM1 108 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 VSTM1Q6UX27 236 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 SCN4BQ8IWT1 228 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 GBP7Q8N8V2 638 aaPredicted RBP13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 FAM172AQ8WUF8 416 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 HERPUD2Q9BSE4 406 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 DDX23Q9BUQ8 820 aaKnown RBP13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 ZWILCHQ9H900 591 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 AAASQ9NRG9 546 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 KLHL11Q9NVR0 708 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 PCSK1NQ9UHG2 260 aa13.65□□□□□ -0.22
SQSTM1-201ENST00000360718 TMEM120BA0PK00 339 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 LRRD1A4D1F6 860 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 CAPN9O14815 690 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 SNX3O60493 162 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 DAB1O75553 588 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 SUN1O94901 812 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 USP17L7P0C7H9 530 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 IVDP26440 423 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 DAOAP59103 153 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 SLC25A11Q02978 314 aaKnown RBP13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 CCDC38Q502W7 563 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 SCYL2Q6P3W7 929 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 RNF19BQ6ZMZ0 732 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 CCDC63Q8NA47 563 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 SCAMP5Q8TAC9 235 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 CCHCR1Q8TD31 782 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 IRGQQ8WZA9 623 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 TRIM62Q9BVG3 475 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 OSBPL8Q9BZF1 889 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 POPDC2Q9HBU9 364 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 KCNK9Q9NPC2 374 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 STAP1Q9ULZ2 295 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 SLC12A4Q9UP95 1085 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 USP15Q9Y4E8 981 aaPredicted RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms