RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 DPEP2Q9H4A9 486 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 RAD21L1Q9H4I0 556 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 EQTNQ9NQ60 294 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 USP18Q9UMW8 372 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 ZNF609O15014 1411 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 C9IYK1 514 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 ACSL4O60488 711 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 PCCBP05166 539 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 FDPSP14324 419 aaKnown RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 RPL17P18621 184 aaKnown RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 TBX4P57082 545 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 GJA9P57773 515 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 SCRN3Q0VDG4 424 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 NR6A1Q15406 480 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 ZSCAN18Q8TBC5 510 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 EPN3Q9H201 632 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 RSAD1Q9HA92 442 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 SLC38A7Q9NVC3 462 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 TNFSF13BQ9Y275 285 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 PCDHB5Q9Y5E4 795 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 A0A0B4J269 797 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 TRIM49D1C9J1S8 452 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 PDXKO00764 312 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 EPHB6O15197 1021 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 NRG1Q02297 640 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 ZNF621Q6ZSS3 439 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 TRAPPC11Q7Z392 1133 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 ST13P4Q8IZP2 240 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 MYO1HQ8N1T3 1032 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 PNPT1Q8TCS8 783 aaKnown RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 ZNF473Q8WTR7 871 aaKnown RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 DEPDC7Q96QD5 511 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 TLE6Q9H808 572 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 SEC22BO75396 215 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 VPS26AO75436 327 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 FCER2P06734 321 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 HSPA9P38646 679 aaKnown RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 TROAPQ12815 778 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 PGM5Q15124 567 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 EXOC4Q96A65 974 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 HTATIP2Q9BUP3 242 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 CLPBQ9H078 707 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 MSRAQ9UJ68 235 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 PTGES3LE9PB15 166 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 FAM228BP0C875 321 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 RAPSNQ13702 412 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 PCSK9Q8NBP7 692 aaKnown RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 FIG4Q92562 907 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 E2F7Q96AV8 911 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 OTUB1Q96FW1 271 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 FBXO6Q9NRD1 293 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 GIMAP4Q9NUV9 329 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 MPP6Q9NZW5 540 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 ATP7BP35670 1465 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 SCN2BO60939 215 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 ATP9AO75110 1047 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 CCR1P32246 355 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 CYP2R1Q6VVX0 501 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 FAM129CQ86XR2 697 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 JAMLQ86YT9 394 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 ZNF786Q8N393 782 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 THAP11Q96EK4 314 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 ZFP14Q9HCL3 533 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 POLR1DQ9Y2S0 133 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 IQSEC2Q5JU85 1478 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 CNTNAP5Q8WYK1 1306 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 ZSCAN5CA6NGD5 496 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 EFNA1P20827 205 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 PRKAA1Q13131 559 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 GPAT3Q53EU6 434 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 IRAK1BP1Q5VVH5 260 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 SERPINA13PQ6UXR4 307 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 CENPLQ8N0S6 344 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 XPO6Q96QU8 1125 aaKnown RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 MRPL1Q9BYD6 325 aaKnown RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 TOR4AQ9NXH8 423 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 PRKAG3Q9UGI9 489 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 LRCH1Q9Y2L9 728 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 RBM7Q9Y580 266 aaKnown RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 LYVE1Q9Y5Y7 322 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 ATP6AP2A0A1C7CYW4 349 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 PRR23D1E9PI22 279 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 CCDC188H7C350 402 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 ATP6AP2O75787 350 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 PRR23D2P0DMB1 279 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 RABL6Q3YEC7 729 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 ZC3H12AQ5D1E8 599 aaKnown RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 FBXO47Q5MNV8 452 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 JPH3Q8WXH2 748 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 B3GNT5Q9BYG0 378 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 THG1LQ9NWX6 298 aaKnown RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 CTNNAL1Q9UBT7 734 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 BTRCQ9Y297 605 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 FAM205AQ6ZU69 1335 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 MYOCOSA0A1B0GUC4 107 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 WDR27A2RRH5 827 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 PSMD11O00231 422 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 PHGDHO43175 533 aaKnown RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 DNAJC8O75937 253 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 LRATO95237 230 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms