RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ATP6V1B1P15313 513 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 ZNF23P17027 643 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 HIST2H2ACQ16777 129 aaPredicted RBP10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 HIST2H2AA3Q6FI13 130 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 CCDC103Q8IW40 242 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 VGLL2Q8N8G2 317 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 TCP10LQ8TDR4 215 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 OSBPL11Q9BXB4 747 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 ACSS3Q9H6R3 686 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 SLC22A2O15244 555 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 FGF10O15520 208 aaPredicted RBP10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 ALDH1A1P00352 501 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 DHFR2Q86XF0 187 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 MAP4K3Q8IVH8 894 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 TMEM121Q9BTD3 319 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 LZTS3O60299 673 aaPredicted RBP10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 SEC24DO94855 1032 aaPredicted RBP10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 CYP1A1P04798 512 aaPredicted RBP10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 BNIP2Q12982 314 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 Q3C1V9 767 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 MIIPQ5JXC2 388 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 ZNF410Q86VK4 478 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 TTC30AQ86WT1 665 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 EID3Q8N140 333 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 TTC30BQ8N4P2 665 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 KCTD14Q9BQ13 255 aaPredicted RBP10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 EMILIN2Q9BXX0 1053 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 SNX13Q9Y5W8 968 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 RPL5P46777 297 aaKnown RBP10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 NFIAQ12857 509 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 DUPD1Q68J44 220 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 PTRHD1Q6GMV3 140 aaKnown RBP10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 C12orf56Q8IXR9 622 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 MIER2Q8N344 545 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 AGR3Q8TD06 166 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 TMEM237Q96Q45 408 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 MED26O95402 600 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 EGFRP00533 1210 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 STK40Q8N2I9 435 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 CBWD1Q9BRT8 395 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 UBXN6Q9BZV1 441 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 DNAJC16Q9Y2G8 782 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 RGPD2P0DJD1 1756 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 ARIH2O95376 493 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 RXRBP28702 533 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 RFX8Q6ZV50 586 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 SV2AQ7L0J3 742 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 CENPLQ8N0S6 344 aaPredicted RBP10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 OR6J1Q8NGC5 347 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 CINPQ9BW66 212 aaPredicted RBP10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 SPATA31A5Q5VU36 1347 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 SPATA31A7Q8IWB4 1347 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 COL14A1Q05707 1796 aaKnown RBP10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 PRR23AA6NEV1 266 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 SIGLEC16A6NMB1 481 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 STX7O15400 261 aaKnown RBP10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 KPNA6O60684 536 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 HLA-DPA1P20036 260 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 HMGCS2P54868 508 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 PKN3Q6P5Z2 889 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 MARK2Q7KZI7 788 aaKnown RBP10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 ALLCQ8N6M5 410 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 IPMKQ8NFU5 416 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 MKL1Q969V6 931 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 MTMR12Q9C0I1 747 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 TNPO3Q9Y5L0 923 aaKnown RBP10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 PMS1P54277 932 aaKnown RBP10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 RIPPLY1Q0D2K3 151 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 PTP4A2Q12974 167 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 DGUOKQ16854 277 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 KCNT1Q5JUK3 1230 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 FAM45BPQ6NSW5 357 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 EFCAB12Q6NXP0 572 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 ULK2Q8IYT8 1036 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 TARS2Q9BW92 718 aaKnown RBP10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 CAB39Q9Y376 341 aaPredicted RBP10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 TJP1Q07157 1748 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 TRAFD1O14545 582 aaPredicted RBP10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 WDR59Q6PJI9 974 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 CBWD2Q8IUF1 395 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 MST1RQ04912 1400 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 SPDYE5A6NIY4 337 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 FKBP9O95302 570 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 RAB27AP51159 221 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 RFX4Q33E94 735 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 SPDYE7PQ495Y7 208 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 FKBP9P1Q75LS8 142 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 IQCKQ8N0W5 287 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 FAM172AQ8WUF8 416 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 PURBQ96QR8 312 aaKnown RBP10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 DYRK4Q9NR20 520 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 TUBA8Q9NY65 449 aaPredicted RBP10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 H7C4K7 107 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 SNAP23O00161 211 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 DDX3XO00571 662 aaKnown RBP eCLIP10.55□□□□□ -0.721e-13■■■■□ 21.5
CCDC88A-202ENST00000336838 XPO1O14980 1071 aaKnown RBP10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 ATP4AP20648 1035 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 PTDSS1P48651 473 aaKnown RBP10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 MDH1BQ5I0G3 518 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 TRAF7Q6Q0C0 670 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms