RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 SFMBT1Q9UHJ3 866 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 CDY1Q9Y6F8 540 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 A0A1W2PQH9 124 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 ZNF487B1APH4 448 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 MSI1O43347 362 aaKnown RBP19.1■□□□□ 0.65
USP39-201ENST00000323701 RNF40O75150 1001 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 SHBGP04278 402 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 WDR5P61964 334 aaKnown RBP19.1■□□□□ 0.65
USP39-201ENST00000323701 GPR17Q13304 367 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 EIF4EBP2Q13542 120 aaPredicted RBP19.1■□□□□ 0.65
USP39-201ENST00000323701 MTMR3Q13615 1198 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 DARS2Q6PI48 645 aaKnown RBP19.1■□□□□ 0.65
USP39-201ENST00000323701 VSTM1Q6UX27 236 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 FAM43BQ6ZT52 329 aaPredicted RBP19.1■□□□□ 0.65
USP39-201ENST00000323701 RNF139Q8WU17 664 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 IGSF21Q96ID5 467 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 C8orf48Q96LL4 319 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 FRMD8P1Q9BZ68 369 aaPredicted RBP19.1■□□□□ 0.65
USP39-201ENST00000323701 MTRF1LQ9UGC7 380 aaKnown RBP19.1■□□□□ 0.65
USP39-201ENST00000323701 MYO16Q9Y6X6 1858 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 CDH23Q9H251 3354 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 C2CD2LO14523 706 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 DNALI1O14645 258 aaPredicted RBP19.09■□□□□ 0.65
USP39-201ENST00000323701 KIAA0355O15063 1070 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 IGLV3-25P01717 112 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 TGM2P21980 687 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 CXCR3P49682 368 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 ROR1Q01973 937 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 DUSP4Q13115 394 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 SEMA3BQ13214 749 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 TTMPQ5BVD1 217 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 NECAB2Q7Z6G3 386 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 RNF168Q8IYW5 571 aaPredicted RBP19.09■□□□□ 0.65
USP39-201ENST00000323701 RSAD2Q8WXG1 361 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 CASP10Q92851 521 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 MED4Q9NPJ6 270 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 DTLQ9NZJ0 730 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 WDR27A2RRH5 827 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 H7C0C1 242 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 RAG1P15918 1043 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 RBL1P28749 1068 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 RFC2P35250 354 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 ATP5OP48047 213 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 ZNF844Q08AG5 666 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 PKN2Q16513 984 aaKnown RBP19.09■□□□□ 0.65
USP39-201ENST00000323701 ANKRD22Q5VYY1 191 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 C16orf59Q7L2K0 433 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 NUP93Q8N1F7 819 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 UHMK1Q8TAS1 419 aaKnown RBP19.09■□□□□ 0.65
USP39-201ENST00000323701 SLC9A7Q96T83 725 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 TKTL2Q9H0I9 626 aa19.09■□□□□ 0.65
USP39-201ENST00000323701 ABHD14A-ACY1A0A1B0GW23 586 aa19.08■□□□□ 0.65
USP39-201ENST00000323701 TCRBV7S3A2A0A539 114 aa19.08■□□□□ 0.65
USP39-201ENST00000323701 MAGEA11P43364 429 aa19.08■□□□□ 0.65
USP39-201ENST00000323701 SCAPQ12770 1279 aa19.08■□□□□ 0.65
USP39-201ENST00000323701 ELAVL2Q12926 359 aaKnown RBP19.08■□□□□ 0.65
USP39-201ENST00000323701 GPS2Q13227 327 aa19.08■□□□□ 0.65
USP39-201ENST00000323701 DPYSQ14117 519 aa19.08■□□□□ 0.65
USP39-201ENST00000323701 HSP90B2PQ58FF3 399 aa19.08■□□□□ 0.65
USP39-201ENST00000323701 EFHC2Q5JST6 749 aa19.08■□□□□ 0.65
USP39-201ENST00000323701 RNASEH2BQ5TBB1 312 aaKnown RBP19.08■□□□□ 0.65
USP39-201ENST00000323701 KCNT2Q6UVM3 1135 aa19.08■□□□□ 0.65
USP39-201ENST00000323701 OTOP2Q7RTS6 562 aa19.08■□□□□ 0.65
USP39-201ENST00000323701 PSTKQ8IV42 348 aaKnown RBP19.08■□□□□ 0.65
USP39-201ENST00000323701 FBXO22Q8NEZ5 403 aa19.08■□□□□ 0.65
USP39-201ENST00000323701 NTAN1Q96AB6 310 aa19.08■□□□□ 0.65
USP39-201ENST00000323701 SEPT5Q99719 369 aaPredicted RBP19.08■□□□□ 0.65
USP39-201ENST00000323701 PABPC3Q9H361 631 aaKnown RBP19.08■□□□□ 0.65
USP39-201ENST00000323701 VPS18Q9P253 973 aa19.08■□□□□ 0.65
USP39-201ENST00000323701 MFSD11O43934 449 aa19.08■□□□□ 0.64
USP39-201ENST00000323701 ARL4AP40617 200 aa19.08■□□□□ 0.64
USP39-201ENST00000323701 SLC29A2Q14542 456 aa19.08■□□□□ 0.64
USP39-201ENST00000323701 MGAT5BQ3V5L5 792 aa19.08■□□□□ 0.64
USP39-201ENST00000323701 SYCP2LQ5T4T6 812 aa19.08■□□□□ 0.64
USP39-201ENST00000323701 BTBD8Q5XKL5 378 aa19.08■□□□□ 0.64
USP39-201ENST00000323701 MFSD5Q6N075 450 aa19.08■□□□□ 0.64
USP39-201ENST00000323701 ANKS3Q6ZW76 656 aa19.08■□□□□ 0.64
USP39-201ENST00000323701 WDCPQ9H6R7 721 aa19.08■□□□□ 0.64
USP39-201ENST00000323701 GMIPQ9P107 970 aa19.08■□□□□ 0.64
USP39-201ENST00000323701 TPX2Q9ULW0 747 aaKnown RBP19.08■□□□□ 0.64
USP39-201ENST00000323701 MRPL42Q9Y6G3 142 aaKnown RBP19.08■□□□□ 0.64
USP39-201ENST00000323701 HSPA1AP0DMV8 641 aaKnown RBP19.07■□□□□ 0.64
USP39-201ENST00000323701 HSPA1BP0DMV9 641 aaKnown RBP19.07■□□□□ 0.64
USP39-201ENST00000323701 RARGP13631 454 aa19.07■□□□□ 0.64
USP39-201ENST00000323701 CTCFP49711 727 aaPredicted RBP19.07■□□□□ 0.64
USP39-201ENST00000323701 CEP85LQ5SZL2 805 aa19.07■□□□□ 0.64
USP39-201ENST00000323701 RFX8Q6ZV50 586 aa19.07■□□□□ 0.64
USP39-201ENST00000323701 CPT1BQ92523 772 aa19.07■□□□□ 0.64
USP39-201ENST00000323701 CDC42EP4Q9H3Q1 356 aaKnown RBP19.07■□□□□ 0.64
USP39-201ENST00000323701 ABCC13Q9NSE7 274 aa19.07■□□□□ 0.64
USP39-201ENST00000323701 SCML2Q9UQR0 700 aa19.07■□□□□ 0.64
USP39-201ENST00000323701 FARP1Q9Y4F1 1045 aaPredicted RBP19.07■□□□□ 0.64
USP39-201ENST00000323701 PTPRSQ13332 1948 aa19.07■□□□□ 0.64
USP39-201ENST00000323701 GOLGA8MH3BSY2 632 aa19.06■□□□□ 0.64
USP39-201ENST00000323701 TRIM66O15016 1216 aa19.06■□□□□ 0.64
USP39-201ENST00000323701 KCNN4O15554 427 aa19.06■□□□□ 0.64
USP39-201ENST00000323701 ATF6P18850 670 aa19.06■□□□□ 0.64
USP39-201ENST00000323701 OR1D2P34982 312 aa19.06■□□□□ 0.64
USP39-201ENST00000323701 USP41Q3LFD5 358 aa19.06■□□□□ 0.64
USP39-201ENST00000323701 FAM129AQ9BZQ8 928 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms