RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 SCUBE3Q8IX30 993 aa17.02■□□□□ 0.32
LSM1-201ENST00000311351 FAM217AQ8IXS0 508 aa17.02■□□□□ 0.32
LSM1-201ENST00000311351 CPXM2Q8N436 756 aa17.02■□□□□ 0.32
LSM1-201ENST00000311351 ERLEC1Q96DZ1 483 aa17.02■□□□□ 0.32
LSM1-201ENST00000311351 ACOX2Q99424 681 aa17.02■□□□□ 0.32
LSM1-201ENST00000311351 SLC4A5Q9BY07 1137 aa17.02■□□□□ 0.32
LSM1-201ENST00000311351 EBF1Q9UH73 591 aa17.02■□□□□ 0.32
LSM1-201ENST00000311351 CLEC4EQ9ULY5 219 aa17.02■□□□□ 0.32
LSM1-201ENST00000311351 USP18Q9UMW8 372 aa17.02■□□□□ 0.32
LSM1-201ENST00000311351 INVSQ9Y283 1065 aa17.02■□□□□ 0.32
LSM1-201ENST00000311351 THADAQ6YHU6 1953 aa17.01■□□□□ 0.31
LSM1-201ENST00000311351 PAPSS1O43252 624 aaPredicted RBP17.01■□□□□ 0.31
LSM1-201ENST00000311351 TSPAN3O60637 253 aa17.01■□□□□ 0.31
LSM1-201ENST00000311351 FYNP06241 537 aa17.01■□□□□ 0.31
LSM1-201ENST00000311351 HARS2P49590 506 aaKnown RBP17.01■□□□□ 0.31
LSM1-201ENST00000311351 KCNMA1Q12791 1236 aa17.01■□□□□ 0.31
LSM1-201ENST00000311351 PDCLQ13371 301 aa17.01■□□□□ 0.31
LSM1-201ENST00000311351 HSF5Q4G112 596 aaPredicted RBP17.01■□□□□ 0.31
LSM1-201ENST00000311351 TCP11X2Q5H9J9 407 aa17.01■□□□□ 0.31
LSM1-201ENST00000311351 DQX1Q8TE96 717 aaKnown RBP17.01■□□□□ 0.31
LSM1-201ENST00000311351 GOLGA1Q92805 767 aa17.01■□□□□ 0.31
LSM1-201ENST00000311351 FAM149B1Q96BN6 582 aa17.01■□□□□ 0.31
LSM1-201ENST00000311351 PIWIL1Q96J94 861 aaKnown RBP17.01■□□□□ 0.31
LSM1-201ENST00000311351 FHOD1Q9Y613 1164 aa17.01■□□□□ 0.31
LSM1-201ENST00000311351 PLXND1Q9Y4D7 1925 aa17.01■□□□□ 0.31
LSM1-201ENST00000311351 TCRBV21S2A2A0A5A6 115 aa17■□□□□ 0.31
LSM1-201ENST00000311351 FOXN3O00409 490 aaPredicted RBP17■□□□□ 0.31
LSM1-201ENST00000311351 IGLV3-27P01718 113 aa17■□□□□ 0.31
LSM1-201ENST00000311351 NCAM1P13591 858 aa17■□□□□ 0.31
LSM1-201ENST00000311351 EEF1GP26641 437 aaKnown RBP17■□□□□ 0.31
LSM1-201ENST00000311351 ACADSBP45954 432 aa17■□□□□ 0.31
LSM1-201ENST00000311351 RAPGEF1Q13905 1077 aa17■□□□□ 0.31
LSM1-201ENST00000311351 GEN1Q17RS7 908 aa17■□□□□ 0.31
LSM1-201ENST00000311351 CT47A1Q5JQC4 288 aaPredicted RBP17■□□□□ 0.31
LSM1-201ENST00000311351 CDKAL1Q5VV42 579 aa17■□□□□ 0.31
LSM1-201ENST00000311351 NUDT18Q6ZVK8 323 aa17■□□□□ 0.31
LSM1-201ENST00000311351 CACNA2D4Q7Z3S7 1137 aa17■□□□□ 0.31
LSM1-201ENST00000311351 ADAM32Q8TC27 787 aa17■□□□□ 0.31
LSM1-201ENST00000311351 ENOX1Q8TC92 643 aaKnown RBP17■□□□□ 0.31
LSM1-201ENST00000311351 DDI1Q8WTU0 396 aa17■□□□□ 0.31
LSM1-201ENST00000311351 HMGB4Q8WW32 186 aa17■□□□□ 0.31
LSM1-201ENST00000311351 RMDN1Q96DB5 314 aa17■□□□□ 0.31
LSM1-201ENST00000311351 LSM14BQ9BX40 385 aaKnown RBP17■□□□□ 0.31
LSM1-201ENST00000311351 FBXO10Q9UK96 956 aa17■□□□□ 0.31
LSM1-201ENST00000311351 NAALADL1Q9UQQ1 740 aa17■□□□□ 0.31
LSM1-201ENST00000311351 STARD13Q9Y3M8 1113 aa17■□□□□ 0.31
LSM1-201ENST00000311351 NUP205Q92621 2012 aa16.99■□□□□ 0.31
LSM1-201ENST00000311351 SART1O43290 800 aaKnown RBP16.99■□□□□ 0.31
LSM1-201ENST00000311351 CYBBP04839 570 aa16.99■□□□□ 0.31
LSM1-201ENST00000311351 HOXB2P14652 356 aa16.99■□□□□ 0.31
LSM1-201ENST00000311351 HOXD9P28356 352 aaPredicted RBP16.99■□□□□ 0.31
LSM1-201ENST00000311351 NTSR1P30989 418 aa16.99■□□□□ 0.31
LSM1-201ENST00000311351 CLCN1P35523 988 aa16.99■□□□□ 0.31
LSM1-201ENST00000311351 SGSHP51688 502 aa16.99■□□□□ 0.31
LSM1-201ENST00000311351 TBX4P57082 545 aa16.99■□□□□ 0.31
LSM1-201ENST00000311351 CCDC6Q16204 474 aa16.99■□□□□ 0.31
LSM1-201ENST00000311351 PLK5Q496M5 336 aa16.99■□□□□ 0.31
LSM1-201ENST00000311351 TRMT11Q7Z4G4 463 aaKnown RBP16.99■□□□□ 0.31
LSM1-201ENST00000311351 TAC4Q86UU9 113 aa16.99■□□□□ 0.31
LSM1-201ENST00000311351 SLC47A2Q86VL8 602 aa16.99■□□□□ 0.31
LSM1-201ENST00000311351 CHPFQ8IZ52 775 aa16.99■□□□□ 0.31
LSM1-201ENST00000311351 WDTC1Q8N5D0 677 aa16.99■□□□□ 0.31
LSM1-201ENST00000311351 C1orf131Q8NDD1 294 aaKnown RBP16.99■□□□□ 0.31
LSM1-201ENST00000311351 STK32AQ8WU08 396 aa16.99■□□□□ 0.31
LSM1-201ENST00000311351 DUSP15Q9H1R2 295 aaPredicted RBP16.99■□□□□ 0.31
LSM1-201ENST00000311351 POLMQ9NP87 494 aaPredicted RBP16.99■□□□□ 0.31
LSM1-201ENST00000311351 PLCB1Q9NQ66 1216 aa16.99■□□□□ 0.31
LSM1-201ENST00000311351 CACNA2D2Q9NY47 1150 aa16.99■□□□□ 0.31
LSM1-201ENST00000311351 BCCIPQ9P287 314 aaKnown RBP eCLIP16.99■□□□□ 0.31
LSM1-201ENST00000311351 STOML2Q9UJZ1 356 aa16.99■□□□□ 0.31
LSM1-201ENST00000311351 SLC27A6Q9Y2P4 619 aa16.99■□□□□ 0.31
LSM1-201ENST00000311351 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.99■□□□□ 0.31
LSM1-201ENST00000311351 CACNA1AO00555 2505 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 MUC22E2RYF6 1773 aaPredicted RBP16.98■□□□□ 0.31
LSM1-201ENST00000311351 FAM170AA1A519 330 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 GFRA2O00451 464 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 ALDH1A2O94788 518 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 EPN2O95208 641 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 BCKDHBP21953 392 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 GBP1P32455 592 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 ID4P47928 161 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 PITX1P78337 314 aaPredicted RBP16.98■□□□□ 0.31
LSM1-201ENST00000311351 PTK2Q05397 1052 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 DRAP1Q14919 205 aaPredicted RBP16.98■□□□□ 0.31
LSM1-201ENST00000311351 KRT31Q15323 416 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 TAF5Q15542 800 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 STX1AQ16623 288 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 KLHDC7AQ5VTJ3 777 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 SYPL2Q5VXT5 272 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 KIAA1211LQ6NV74 962 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 RFWD3Q6PCD5 774 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 SASS6Q6UVJ0 657 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 TMEM110Q86TL2 294 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 KCNV2Q8TDN2 545 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 RLN3Q8WXF3 142 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 FCRL2Q96LA5 508 aaPredicted RBP16.98■□□□□ 0.31
LSM1-201ENST00000311351 SERPINB11Q96P15 392 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 CPXM1Q96SM3 734 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 VPS16Q9H269 839 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 ARRDC1-AS1Q9H2J1 176 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms