RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 TREML2Q5T2D2 321 aa19.04■□□□□ 0.64
PCDH1-201ENST00000287008 HTR3CQ8WXA8 447 aa19.04■□□□□ 0.64
PCDH1-201ENST00000287008 CASKIN2Q8WXE0 1202 aa19.04■□□□□ 0.64
PCDH1-201ENST00000287008 SEPT3Q9UH03 358 aa19.04■□□□□ 0.64
PCDH1-201ENST00000287008 KIF20BQ96Q89 1820 aa19.04■□□□□ 0.64
PCDH1-201ENST00000287008 TBC1D3BA6NDS4 549 aa19.04■□□□□ 0.64
PCDH1-201ENST00000287008 NCF1BA6NI72 391 aaPredicted RBP19.04■□□□□ 0.64
PCDH1-201ENST00000287008 NCF1CA8MVU1 366 aaPredicted RBP19.04■□□□□ 0.64
PCDH1-201ENST00000287008 F8W810 466 aa19.04■□□□□ 0.64
PCDH1-201ENST00000287008 MYO1CO00159 1063 aa19.04■□□□□ 0.64
PCDH1-201ENST00000287008 SPTLC1O15269 473 aa19.04■□□□□ 0.64
PCDH1-201ENST00000287008 NCF1P14598 390 aaPredicted RBP19.04■□□□□ 0.64
PCDH1-201ENST00000287008 GPC1P35052 558 aa19.04■□□□□ 0.64
PCDH1-201ENST00000287008 GLRBP48167 497 aa19.04■□□□□ 0.64
PCDH1-201ENST00000287008 DNAJC3Q13217 504 aa19.04■□□□□ 0.64
PCDH1-201ENST00000287008 NYAP1Q6ZVC0 841 aa19.04■□□□□ 0.64
PCDH1-201ENST00000287008 IL17RAQ96F46 866 aa19.04■□□□□ 0.64
PCDH1-201ENST00000287008 TKTL2Q9H0I9 626 aa19.04■□□□□ 0.64
PCDH1-201ENST00000287008 UBA2Q9UBT2 640 aaPredicted RBP19.04■□□□□ 0.64
PCDH1-201ENST00000287008 NCKAP1Q9Y2A7 1128 aa19.04■□□□□ 0.64
PCDH1-201ENST00000287008 MRPS23Q9Y3D9 190 aaKnown RBP19.04■□□□□ 0.64
PCDH1-201ENST00000287008 ADH1AP07327 375 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 GRK4P32298 578 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 NR2C2P49116 596 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 PPP3CAQ08209 521 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 HECTD3Q5T447 861 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 PAPD7Q5XG87 772 aaKnown RBP19.03■□□□□ 0.64
PCDH1-201ENST00000287008 WNT8BQ93098 351 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 ZNF333Q96JL9 665 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 C2orf49Q9BVC5 232 aaPredicted RBP19.03■□□□□ 0.64
PCDH1-201ENST00000287008 ARHGEF28Q8N1W1 1705 aaKnown RBP19.03■□□□□ 0.64
PCDH1-201ENST00000287008 AKAP10O43572 662 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 CNTFP26441 200 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 MIPP30301 263 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 PRIM2P49643 509 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 NCALDP61601 193 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 ST3GAL1Q11201 340 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 STX5Q13190 355 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 LAYNQ6UX15 382 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 LBX2Q6XYB7 198 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 DNAAF5Q86Y56 855 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 HELQQ8TDG4 1101 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 TMEM159Q96B96 161 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 CACNA2D2Q9NY47 1150 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 MORC2Q9Y6X9 1032 aaPredicted RBP19.03■□□□□ 0.64
PCDH1-201ENST00000287008 B2RBV5 119 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 NFICP08651 508 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 CSH1P0DML2 217 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 CSH2P0DML3 217 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 HDCP19113 662 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 ANXA11P50995 505 aaKnown RBP19.03■□□□□ 0.64
PCDH1-201ENST00000287008 POLE2P56282 527 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 POLR2LP62875 67 aaKnown RBP19.03■□□□□ 0.64
PCDH1-201ENST00000287008 OCA2Q04671 838 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 ANKRD23Q86SG2 305 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 REM2Q8IYK8 340 aaPredicted RBP19.03■□□□□ 0.64
PCDH1-201ENST00000287008 ECSITQ9BQ95 431 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 CEP41Q9BYV8 373 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 UTP6Q9NYH9 597 aaKnown RBP19.03■□□□□ 0.64
PCDH1-201ENST00000287008 SHOC2Q9UQ13 582 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 MROH1Q8NDA8 1641 aa19.03■□□□□ 0.64
PCDH1-201ENST00000287008 DYRK3O43781 588 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 TOMM70O94826 608 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 MSH3P20585 1137 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 RAD23BP54727 409 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 BCL2L1Q07817 233 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 E2F4Q16254 413 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 KCNV2Q8TDN2 545 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 INPP4AQ96PE3 977 aaPredicted RBP19.02■□□□□ 0.64
PCDH1-201ENST00000287008 CDH9Q9ULB4 789 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 C2CD2Q9Y426 696 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 PDE4DIPQ5VU43 2346 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 BTBD19C9JJ37 291 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 DDX3XO00571 662 aaKnown RBP eCLIP19.02■□□□□ 0.64
PCDH1-201ENST00000287008 ZNF7P17097 686 aaPredicted RBP19.02■□□□□ 0.64
PCDH1-201ENST00000287008 NPR3P17342 541 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 DMC1Q14565 340 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 NBPF20Q3BBV1 942 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 CLEC4FQ8N1N0 589 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 VAT1Q99536 393 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 THTPAQ9BU02 230 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 ACTR8Q9H981 624 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 ASAH2Q9NR71 780 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 FBXO10Q9UK96 956 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 MYO1GB0I1T2 1018 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 RPL9P32969 192 aaKnown RBP19.02■□□□□ 0.64
PCDH1-201ENST00000287008 SOX11P35716 441 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 CREMQ03060 361 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 USP41Q3LFD5 358 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 MFSD7Q6UXD7 560 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 RD3Q7Z3Z2 195 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 AGGF1Q8N302 714 aaeCLIP19.02■□□□□ 0.64
PCDH1-201ENST00000287008 ZNF473Q8WTR7 871 aaKnown RBP19.02■□□□□ 0.64
PCDH1-201ENST00000287008 FAM162AQ96A26 154 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 C17orf80Q9BSJ5 609 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 IL1RL2Q9HB29 575 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 CYP4F12Q9HCS2 524 aa19.02■□□□□ 0.64
PCDH1-201ENST00000287008 IGF2BP3O00425 579 aaKnown RBP eCLIP19.02■□□□□ 0.63
PCDH1-201ENST00000287008 POLR2EP19388 210 aaKnown RBP19.02■□□□□ 0.63
PCDH1-201ENST00000287008 LSP1P33241 339 aa19.02■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms