RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 KIAA0895Q8NCT3 520 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 KAZALD1Q96I82 304 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 MAGED4Q96JG8 741 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 MAGEB10Q96LZ2 347 aaPredicted RBP8.94□□□□□ -0.98
PTCD3-201ENST00000254630 TMEM120AQ9BXJ8 343 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 OSGEPQ9NPF4 335 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 USE1Q9NZ43 259 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 FBXL21Q9UKT6 434 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 RAD54BQ9Y620 910 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 MYO5BQ9ULV0 1848 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 TM9SF1O15321 606 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 TOMM70O94826 608 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 JCHAINP01591 159 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 LGALS2P05162 132 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 TFE3P19532 575 aaPredicted RBP8.94□□□□□ -0.98
PTCD3-201ENST00000254630 NR2C2P49116 596 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 DNAJC3Q13217 504 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 DACT2Q5SW24 774 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 RIN3Q8TB24 985 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 GPRC5DQ9NZD1 345 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.94□□□□□ -0.98
PTCD3-201ENST00000254630 DNAJC16Q9Y2G8 782 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 SLIT3O75094 1523 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 HACD1B0YJ81 288 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 PRR23D1E9PI22 279 aaPredicted RBP8.94□□□□□ -0.98
PTCD3-201ENST00000254630 PRR23D2P0DMB1 279 aaPredicted RBP8.94□□□□□ -0.98
PTCD3-201ENST00000254630 PTPN3P26045 913 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 LRRC34Q8IZ02 419 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 SPIRE2Q8WWL2 714 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 APBB2Q92870 758 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 CPNE1Q99829 537 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 ABHD16BQ9H3Z7 469 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 TRIM17Q9Y577 477 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 SNX8Q9Y5X2 465 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 ZW10O43264 779 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 RAMP2O60895 175 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 CSTF3Q12996 717 aaKnown RBP8.94□□□□□ -0.98
PTCD3-201ENST00000254630 ZNF268Q14587 947 aaPredicted RBP8.94□□□□□ -0.98
PTCD3-201ENST00000254630 SLC9A5Q14940 896 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 TRIP10Q15642 601 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 CCDC81Q6ZN84 652 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 RIOX2Q8IUF8 465 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 KRT78Q8N1N4 520 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 TUBGCP4Q9UGJ1 667 aa8.94□□□□□ -0.98
PTCD3-201ENST00000254630 NFASCO94856 1347 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 A0A087X1B8 175 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 RNF103O00237 685 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 PAEPP09466 180 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 USP17L7P0C7H9 530 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 KRT20P35900 424 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 PMS1P54277 932 aaKnown RBP8.93□□□□□ -0.98
PTCD3-201ENST00000254630 TRMT11Q7Z4G4 463 aaKnown RBP8.93□□□□□ -0.98
PTCD3-201ENST00000254630 ARID3BQ8IVW6 561 aaPredicted RBP8.93□□□□□ -0.98
PTCD3-201ENST00000254630 GANQ9H2C0 597 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 PABPC3Q9H361 631 aaKnown RBP8.93□□□□□ -0.98
PTCD3-201ENST00000254630 MRPL17Q9NRX2 175 aaKnown RBP8.93□□□□□ -0.98
PTCD3-201ENST00000254630 UTP6Q9NYH9 597 aaKnown RBP8.93□□□□□ -0.98
PTCD3-201ENST00000254630 DAB1O75553 588 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 RASSF9O75901 435 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 OR56A5P0C7T3 313 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 SMIM10L2AP0DMW4 78 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 SMIM10L2BP0DMW5 78 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 POLR2EP19388 210 aaKnown RBP8.93□□□□□ -0.98
PTCD3-201ENST00000254630 MRPS6P82932 125 aaKnown RBP8.93□□□□□ -0.98
PTCD3-201ENST00000254630 ATP6AP1LQ52LC2 224 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 FIGNQ5HY92 759 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 MARC1Q5VT66 337 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 TMEM86AQ8N2M4 240 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 C3orf20Q8ND61 904 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 ACOX2Q99424 681 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 CAAP1Q9H8G2 361 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 ATP13A1Q9HD20 1204 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 TMEM150BA6NC51 233 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 PSMD12O00232 456 aaPredicted RBP8.93□□□□□ -0.98
PTCD3-201ENST00000254630 MTA2O94776 668 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 TCF3P15923 654 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 BGNP21810 368 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 SLC6A3Q01959 620 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 CCDC153Q494R4 210 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 TAF2Q6P1X5 1199 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 CATSPERGQ6ZRH7 1159 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 KCNMB4Q86W47 210 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 ANKRD7Q92527 254 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 GFM2Q969S9 779 aaKnown RBP8.93□□□□□ -0.98
PTCD3-201ENST00000254630 ERLEC1Q96DZ1 483 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 CCT7Q99832 543 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 CDC42EP4Q9H3Q1 356 aaKnown RBP8.93□□□□□ -0.98
PTCD3-201ENST00000254630 INTS13Q9NVM9 706 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 RBM22Q9NW64 420 aaKnown RBP eCLIP8.93□□□□□ -0.982e-12■■■■□ 25.3
PTCD3-201ENST00000254630 HEY2Q9UBP5 337 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 PLAGL2Q9UPG8 496 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 DUSP10Q9Y6W6 482 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 GAKO14976 1311 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 ZNF839A8K0R7 811 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 RBAK-RBAKDNI3L0D1 243 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 RAD51BO15315 384 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 ADCY6O43306 1168 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 UBTFL6P0CB48 400 aaPredicted RBP8.93□□□□□ -0.98
PTCD3-201ENST00000254630 NPY2RP49146 381 aa8.93□□□□□ -0.98
PTCD3-201ENST00000254630 RPS7P62081 194 aaKnown RBP8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms