RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 CFAP61Q8NHU2 1237 aa22.04■■□□□ 1.12
TRIM28-201ENST00000253024 TBCBQ99426 244 aa22.04■■□□□ 1.12
TRIM28-201ENST00000253024 TRIM6Q9C030 488 aaPredicted RBP22.04■■□□□ 1.12
TRIM28-201ENST00000253024 UBP1Q9NZI7 540 aa22.04■■□□□ 1.12
TRIM28-201ENST00000253024 BPTFQ12830 3046 aa22.04■■□□□ 1.12
TRIM28-201ENST00000253024 SNX30Q5VWJ9 437 aa22.04■■□□□ 1.12
TRIM28-201ENST00000253024 HEATR6Q6AI08 1181 aaKnown RBP22.04■■□□□ 1.12
TRIM28-201ENST00000253024 SH2D5Q6ZV89 423 aa22.04■■□□□ 1.12
TRIM28-201ENST00000253024 TNS4Q8IZW8 715 aa22.04■■□□□ 1.12
TRIM28-201ENST00000253024 PGBD4Q96DM1 585 aa22.04■■□□□ 1.12
TRIM28-201ENST00000253024 PTCD3Q96EY7 689 aaKnown RBP22.04■■□□□ 1.12
TRIM28-201ENST00000253024 PLLPQ9Y342 182 aa22.04■■□□□ 1.12
TRIM28-201ENST00000253024 LGR5O75473 907 aa22.03■■□□□ 1.12
TRIM28-201ENST00000253024 SLC6A3Q01959 620 aa22.03■■□□□ 1.12
TRIM28-201ENST00000253024 DCAF6Q58WW2 860 aa22.03■■□□□ 1.12
TRIM28-201ENST00000253024 SH3D19Q5HYK7 790 aa22.03■■□□□ 1.12
TRIM28-201ENST00000253024 LCLAT1Q6UWP7 414 aa22.03■■□□□ 1.12
TRIM28-201ENST00000253024 ZNF534Q76KX8 674 aa22.03■■□□□ 1.12
TRIM28-201ENST00000253024 TEX9Q8N6V9 391 aa22.03■■□□□ 1.12
TRIM28-201ENST00000253024 RBM15BQ8NDT2 890 aaKnown RBP22.03■■□□□ 1.12
TRIM28-201ENST00000253024 SLC2A14Q8TDB8 520 aa22.03■■□□□ 1.12
TRIM28-201ENST00000253024 STMN2Q93045 179 aa22.03■■□□□ 1.12
TRIM28-201ENST00000253024 OPTNQ96CV9 577 aa22.03■■□□□ 1.12
TRIM28-201ENST00000253024 KCTD15Q96SI1 283 aaPredicted RBP22.03■■□□□ 1.12
TRIM28-201ENST00000253024 EFR3BQ9Y2G0 817 aa22.03■■□□□ 1.12
TRIM28-201ENST00000253024 VAV1P15498 845 aa22.03■■□□□ 1.12
TRIM28-201ENST00000253024 EPHB1P54762 984 aa22.03■■□□□ 1.12
TRIM28-201ENST00000253024 PRAMEF19Q5SWL8 479 aa22.03■■□□□ 1.12
TRIM28-201ENST00000253024 CAPRIN2Q6IMN6 1127 aaKnown RBP22.03■■□□□ 1.12
TRIM28-201ENST00000253024 CATSPER4Q7RTX7 472 aa22.03■■□□□ 1.12
TRIM28-201ENST00000253024 RPAINQ86UA6 219 aa22.03■■□□□ 1.12
TRIM28-201ENST00000253024 SKA1Q96BD8 255 aa22.03■■□□□ 1.12
TRIM28-201ENST00000253024 RNF39Q9H2S5 420 aa22.03■■□□□ 1.12
TRIM28-201ENST00000253024 MAN1C1Q9NR34 630 aa22.03■■□□□ 1.12
TRIM28-201ENST00000253024 EME2A4GXA9 379 aaPredicted RBP22.02■■□□□ 1.12
TRIM28-201ENST00000253024 SPDYE5A6NIY4 337 aa22.02■■□□□ 1.12
TRIM28-201ENST00000253024 CHADO15335 359 aa22.02■■□□□ 1.12
TRIM28-201ENST00000253024 SLC25A3Q00325 362 aa22.02■■□□□ 1.12
TRIM28-201ENST00000253024 CRYMQ14894 314 aa22.02■■□□□ 1.12
TRIM28-201ENST00000253024 FAM47CQ5HY64 1035 aa22.02■■□□□ 1.12
TRIM28-201ENST00000253024 DNAJC9Q8WXX5 260 aa22.02■■□□□ 1.12
TRIM28-201ENST00000253024 ALKBH8Q96BT7 664 aaKnown RBP22.02■■□□□ 1.12
TRIM28-201ENST00000253024 H3BRB1 525 aa22.02■■□□□ 1.12
TRIM28-201ENST00000253024 C1QAP02745 245 aa22.02■■□□□ 1.12
TRIM28-201ENST00000253024 ANO7Q6IWH7 933 aa22.02■■□□□ 1.12
TRIM28-201ENST00000253024 TUT1Q9H6E5 874 aaKnown RBP22.02■■□□□ 1.12
TRIM28-201ENST00000253024 TIMM13Q9Y5L4 95 aaPredicted RBP22.02■■□□□ 1.12
TRIM28-201ENST00000253024 CITO14578 2027 aa22.02■■□□□ 1.11
TRIM28-201ENST00000253024 ARHGAP42A6NI28 874 aa22.02■■□□□ 1.11
TRIM28-201ENST00000253024 GABRB2P47870 512 aa22.02■■□□□ 1.11
TRIM28-201ENST00000253024 PDE1BQ01064 536 aa22.02■■□□□ 1.11
TRIM28-201ENST00000253024 ARHGAP1Q07960 439 aa22.02■■□□□ 1.11
TRIM28-201ENST00000253024 ADGRF2Q8IZF7 708 aa22.02■■□□□ 1.11
TRIM28-201ENST00000253024 OXCT2Q9BYC2 517 aaPredicted RBP22.02■■□□□ 1.11
TRIM28-201ENST00000253024 DPPA5A6NC42 116 aa22.01■■□□□ 1.11
TRIM28-201ENST00000253024 TPP1O14773 563 aa22.01■■□□□ 1.11
TRIM28-201ENST00000253024 L1CAMP32004 1257 aa22.01■■□□□ 1.11
TRIM28-201ENST00000253024 SLC18A1P54219 525 aa22.01■■□□□ 1.11
TRIM28-201ENST00000253024 SLC18A2Q05940 514 aa22.01■■□□□ 1.11
TRIM28-201ENST00000253024 SCG3Q8WXD2 468 aaKnown RBP22.01■■□□□ 1.11
TRIM28-201ENST00000253024 SIGLEC10Q96LC7 697 aa22.01■■□□□ 1.11
TRIM28-201ENST00000253024 DTLQ9NZJ0 730 aa22.01■■□□□ 1.11
TRIM28-201ENST00000253024 SNX10Q9Y5X0 201 aa22.01■■□□□ 1.11
TRIM28-201ENST00000253024 MFSD11O43934 449 aa22.01■■□□□ 1.11
TRIM28-201ENST00000253024 PDE5AO76074 875 aa22.01■■□□□ 1.11
TRIM28-201ENST00000253024 DHRS4L1P0CG22 281 aa22.01■■□□□ 1.11
TRIM28-201ENST00000253024 MCF2P10911 925 aa22.01■■□□□ 1.11
TRIM28-201ENST00000253024 BOLA3Q53S33 107 aa22.01■■□□□ 1.11
TRIM28-201ENST00000253024 N4BP2L1Q5TBK1 243 aaPredicted RBP22.01■■□□□ 1.11
TRIM28-201ENST00000253024 ATG14Q6ZNE5 492 aa22.01■■□□□ 1.11
TRIM28-201ENST00000253024 SMC1BQ8NDV3 1235 aa22.01■■□□□ 1.11
TRIM28-201ENST00000253024 CSPG4P5Q96PW8 444 aa22.01■■□□□ 1.11
TRIM28-201ENST00000253024 CAB39LQ9H9S4 337 aa22.01■■□□□ 1.11
TRIM28-201ENST00000253024 DNAJC16Q9Y2G8 782 aa22.01■■□□□ 1.11
TRIM28-201ENST00000253024 MTO1Q9Y2Z2 717 aaKnown RBP22.01■■□□□ 1.11
TRIM28-201ENST00000253024 TNS1Q9HBL0 1735 aaKnown RBP22.01■■□□□ 1.11
TRIM28-201ENST00000253024 SPTLC1O15269 473 aa22■■□□□ 1.11
TRIM28-201ENST00000253024 CD1EP15812 388 aa22■■□□□ 1.11
TRIM28-201ENST00000253024 PSMB4P28070 264 aa22■■□□□ 1.11
TRIM28-201ENST00000253024 CCNHP51946 323 aaPredicted RBP22■■□□□ 1.11
TRIM28-201ENST00000253024 ATXN3P54252 364 aaPredicted RBP22■■□□□ 1.11
TRIM28-201ENST00000253024 DLG2Q15700 870 aa22■■□□□ 1.11
TRIM28-201ENST00000253024 FASTKD1Q53R41 847 aaKnown RBP22■■□□□ 1.11
TRIM28-201ENST00000253024 STKLD1Q8NE28 680 aa22■■□□□ 1.11
TRIM28-201ENST00000253024 ARHGEF4Q9NR80 690 aa22■■□□□ 1.11
TRIM28-201ENST00000253024 PNPOQ9NVS9 261 aa22■■□□□ 1.11
TRIM28-201ENST00000253024 CNTN3Q9P232 1028 aa22■■□□□ 1.11
TRIM28-201ENST00000253024 PAPPA2Q9BXP8 1791 aa22■■□□□ 1.11
TRIM28-201ENST00000253024 NAIF1Q69YI7 327 aaPredicted RBP22■■□□□ 1.11
TRIM28-201ENST00000253024 COLGALT1Q8NBJ5 622 aa22■■□□□ 1.11
TRIM28-201ENST00000253024 DONSONQ9NYP3 566 aa22■■□□□ 1.11
TRIM28-201ENST00000253024 NVLO15381 856 aaKnown RBP21.99■■□□□ 1.11
TRIM28-201ENST00000253024 BEST1O76090 585 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 ENDOD1O94919 500 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 C6orf222P0C671 652 aaPredicted RBP21.99■■□□□ 1.11
TRIM28-201ENST00000253024 UBTFL6P0CB48 400 aaPredicted RBP21.99■■□□□ 1.11
TRIM28-201ENST00000253024 TPH1P17752 444 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 ADIGQ0VDE8 80 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 CRLF3Q8IUI8 442 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 DEFB106AQ8N104 65 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms