RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 ZNF746Q6NUN9 644 aaPredicted RBP13.41□□□□□ -0.26
MSH2-201ENST00000233146 GSTA5Q7RTV2 222 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 DSG4Q86SJ6 1040 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.41□□□□□ -0.26
MSH2-201ENST00000233146 DCPSQ96C86 337 aaKnown RBP13.41□□□□□ -0.26
MSH2-201ENST00000233146 PCDHB18PQ96TA0 734 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 YME1L1Q96TA2 773 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 SLC29A1Q99808 456 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 PLA2G12BQ9BX93 195 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 COQ10BQ9H8M1 238 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.41□□□□□ -0.26
MSH2-201ENST00000233146 BAZ2AQ9UIF9 1905 aaKnown RBP13.41□□□□□ -0.26
MSH2-201ENST00000233146 AP3B1O00203 1094 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 ENTPD3O75355 529 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 GLRA2P23416 452 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 ZNF135P52742 658 aaPredicted RBP13.41□□□□□ -0.26
MSH2-201ENST00000233146 PHC1P78364 1004 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 PEX6Q13608 980 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 ZNF846Q147U1 533 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 CDHR3Q6ZTQ4 885 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 TXNDC15Q96J42 360 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 STN1Q9H668 368 aaKnown RBP13.41□□□□□ -0.26
MSH2-201ENST00000233146 FANCEQ9HB96 536 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 PARVAQ9NVD7 372 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 ARHGAP26Q9UNA1 814 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 APOBEC2Q9Y235 224 aaKnown RBP13.41□□□□□ -0.26
MSH2-201ENST00000233146 RICTORQ6R327 1708 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 UBR1Q8IWV7 1749 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 DDHD2O94830 711 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 HSPA1AP0DMV8 641 aaKnown RBP13.41□□□□□ -0.26
MSH2-201ENST00000233146 HSPA1BP0DMV9 641 aaKnown RBP13.41□□□□□ -0.26
MSH2-201ENST00000233146 FDX1P10109 184 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 GZMAP12544 262 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 GLULP15104 373 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 CTRB1P17538 263 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 GRK2P25098 689 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 NME3Q13232 169 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 FLOT2Q14254 428 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 LRIT3Q3SXY7 679 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 CTRB2Q6GPI1 263 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 FAM117BQ6P1L5 589 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 TMC5Q6UXY8 1006 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 HACE1Q8IYU2 909 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 GABPB2Q8TAK5 448 aaPredicted RBP13.41□□□□□ -0.26
MSH2-201ENST00000233146 PCDHA12Q9UN75 941 aa13.41□□□□□ -0.26
MSH2-201ENST00000233146 IQANK1A0A1B0GTG1 560 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 CLDN25C9JDP6 229 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 SLC37A4O43826 429 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 BCL10O95999 233 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 CCNA2P20248 432 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 GRIA3P42263 894 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 FMO5P49326 533 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 C19orf57Q0VDD7 668 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 NFE2Q16621 373 aaPredicted RBP13.4□□□□□ -0.26
MSH2-201ENST00000233146 TJAP1Q5JTD0 557 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 HAUS6Q7Z4H7 955 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 AKAP14Q86UN6 197 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 BRSK1Q8TDC3 778 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 RAPGEF4Q8WZA2 1011 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 CNDP2Q96KP4 475 aaKnown RBP13.4□□□□□ -0.26
MSH2-201ENST00000233146 HEMGNQ9BXL5 484 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 IFT122Q9HBG6 1241 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 ARHGEF35A5YM69 484 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 ACOX3O15254 700 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 TSPAN1O60635 241 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 RNASEH2AO75792 299 aaKnown RBP13.4□□□□□ -0.26
MSH2-201ENST00000233146 RALAP11233 206 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 OPRL1P41146 370 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 IFITM3Q01628 133 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 FAM47AQ5JRC9 791 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 SLC10A5Q5PT55 438 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 RNASEH2BQ5TBB1 312 aaKnown RBP13.4□□□□□ -0.26
MSH2-201ENST00000233146 ADGRA1Q86SQ6 560 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 GPBP1Q86WP2 473 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 TOR1AIP2Q8NFQ8 470 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 DLG3Q92796 817 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 PEX13Q92968 403 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 SH3YL1Q96HL8 342 aaPredicted RBP13.4□□□□□ -0.26
MSH2-201ENST00000233146 FEM1CQ96JP0 617 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 CLPBQ9H078 707 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 INTS2Q9H0H0 1204 aaKnown RBP13.4□□□□□ -0.26
MSH2-201ENST00000233146 SLC38A10Q9HBR0 1119 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 NEK6Q9HC98 313 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 CNNM1Q9NRU3 951 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 PACSIN3Q9UKS6 424 aa13.4□□□□□ -0.26
MSH2-201ENST00000233146 PRPF19Q9UMS4 504 aaKnown RBP13.4□□□□□ -0.26
MSH2-201ENST00000233146 LOC100653049A0A140TA62 436 aa13.39□□□□□ -0.27
MSH2-201ENST00000233146 KRT34O76011 436 aa13.39□□□□□ -0.27
MSH2-201ENST00000233146 ZSCAN5DPP0CG00 497 aa13.39□□□□□ -0.27
MSH2-201ENST00000233146 BDNFP23560 247 aa13.39□□□□□ -0.27
MSH2-201ENST00000233146 CHRNA2Q15822 529 aa13.39□□□□□ -0.27
MSH2-201ENST00000233146 HYIQ5T013 277 aa13.39□□□□□ -0.27
MSH2-201ENST00000233146 LMOD2Q6P5Q4 547 aa13.39□□□□□ -0.27
MSH2-201ENST00000233146 DPF3Q92784 378 aa13.39□□□□□ -0.27
MSH2-201ENST00000233146 NAP1L4Q99733 375 aaKnown RBP13.39□□□□□ -0.27
MSH2-201ENST00000233146 ZBTB3Q9H5J0 574 aa13.39□□□□□ -0.27
MSH2-201ENST00000233146 AVENQ9NQS1 362 aaPredicted RBP13.39□□□□□ -0.27
MSH2-201ENST00000233146 IL17RBQ9NRM6 502 aa13.39□□□□□ -0.27
MSH2-201ENST00000233146 KCNN3Q9UGI6 736 aa13.39□□□□□ -0.27
MSH2-201ENST00000233146 SHOC2Q9UQ13 582 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms