RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 GOLGA7BQ2TAP0 167 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 TCHHL1Q5QJ38 904 aaPredicted RBP11.07□□□□□ -0.64
USP28-201ENST00000003302 SNX31Q8N9S9 440 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 OTUD5Q96G74 571 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 AGAP2Q99490 1192 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 CORO1CQ9ULV4 474 aaPredicted RBP11.07□□□□□ -0.64
USP28-201ENST00000003302 SNX10Q9Y5X0 201 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 KCNK1O00180 336 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 ACKR2O00590 384 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 B4GALT4O60513 344 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 CCDC22O60826 627 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 DNAJC6O75061 913 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 TROVE2P10155 538 aaKnown RBP eCLIP11.06□□□□□ -0.64
USP28-201ENST00000003302 INSRRP14616 1297 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 ICAM3P32942 547 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 NDUFV1P49821 464 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 IRF9Q00978 393 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 FYB2Q5VWT5 728 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 ULK2Q8IYT8 1036 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 AGAP3Q96P47 875 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 SPATC1LQ9H0A9 340 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 SNX9Q9Y5X1 595 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 ANKRD12Q6UB98 2062 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 WDR90Q96KV7 1748 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 FAM72CH0Y354 149 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 SPTLC1O15269 473 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 WFS1O76024 890 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 RNF8O76064 485 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 AFF1P51825 1210 aaKnown RBP11.06□□□□□ -0.64
USP28-201ENST00000003302 EPHB1P54762 984 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 BCAR1P56945 870 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 PDE1CQ14123 709 aaPredicted RBP11.06□□□□□ -0.64
USP28-201ENST00000003302 FAM72AQ5TYM5 149 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 FAM72DQ6L9T8 149 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 GADL1Q6ZQY3 521 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 SLC26A11Q86WA9 606 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 FAM72BQ86X60 149 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 RNF148Q8N7C7 305 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 ARNTL2Q8WYA1 636 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 MCUR1Q96AQ8 359 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 CCDC106Q9BWC9 280 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 EIF2AQ9BY44 585 aaKnown RBP11.06□□□□□ -0.64
USP28-201ENST00000003302 DHX35Q9H5Z1 703 aaKnown RBP11.06□□□□□ -0.64
USP28-201ENST00000003302 DCLRE1BQ9H816 532 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 CLDN5O00501 218 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 TM9SF1O15321 606 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 BAG2O95816 211 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 GPD1P21695 349 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 KLHL38Q2WGJ6 581 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 METTL7BQ6UX53 244 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.06□□□□□ -0.64
USP28-201ENST00000003302 LENG1Q96BZ8 264 aaPredicted RBP11.06□□□□□ -0.64
USP28-201ENST00000003302 LHX5Q9H2C1 402 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 DTLQ9NZJ0 730 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 KLK14Q9P0G3 267 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 TMEM216Q9P0N5 145 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 SENP1Q9P0U3 644 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 SIRPGQ9P1W8 387 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 HBS1LQ9Y450 684 aaKnown RBP11.06□□□□□ -0.64
USP28-201ENST00000003302 A0A088AWK7 358 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 LCP1P13796 627 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 AKAP5P24588 427 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 IL31Q6EBC2 164 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 POTEAQ6S8J7 498 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 C10orf107Q8IVU9 208 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 SPATA6LQ8N4H0 392 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 E2F7Q96AV8 911 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 SORT1Q99523 831 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 EBF3Q9H4W6 596 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 GBA2Q9HCG7 927 aaPredicted RBP11.06□□□□□ -0.64
USP28-201ENST00000003302 TMEM30AQ9NV96 361 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 HESX1Q9UBX0 185 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 ADAMTS6Q9UKP5 1117 aa11.06□□□□□ -0.64
USP28-201ENST00000003302 TPP1O14773 563 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 ZBTB14O43829 449 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 ZBED1O96006 694 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 CYP2F1P24903 491 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 ADORA2BP29275 332 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 KRT81Q14533 505 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 CCDC6Q16204 474 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 KIZQ2M2Z5 673 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 PPM1LQ5SGD2 360 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 NLGN2Q8NFZ4 835 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 MARK4Q96L34 752 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 FCRL3Q96P31 734 aaPredicted RBP11.05□□□□□ -0.64
USP28-201ENST00000003302 GORASP1Q9BQQ3 440 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 ELP3Q9H9T3 547 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 RPF1Q9H9Y2 349 aaKnown RBP11.05□□□□□ -0.64
USP28-201ENST00000003302 C2CD2Q9Y426 696 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 REV3LO60673 3130 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 FGF3P11487 239 aaPredicted RBP11.05□□□□□ -0.64
USP28-201ENST00000003302 TKTP29401 623 aaKnown RBP11.05□□□□□ -0.64
USP28-201ENST00000003302 PHBP35232 272 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 HADHQ16836 314 aaKnown RBP11.05□□□□□ -0.64
USP28-201ENST00000003302 CASC4Q6P4E1 433 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 HPS6Q86YV9 775 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 TEX2Q8IWB9 1127 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.05□□□□□ -0.64
USP28-201ENST00000003302 ANKRD36BP1Q96IX9 119 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 RNF39Q9H2S5 420 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms